PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_54D11D5E7.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 311aa MW: 33845 Da PI: 6.0899 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 15 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv+ +++ Gg+ +W+ ++ g++R++k+c++rw++yl Traes_2DL_54D11D5E7.1 15 KGPWTEEEDKALVEHIQKRGGNvgSWRGLPKAAGLNRCGKSCRLRWNNYL 64 79***********************************************7 PP | |||||||
2 | Myb_DNA-binding | 53.7 | 4.8e-17 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eE+ l++ +++ lG++ W+tIa ++ gRt++++k++w+++ Traes_2DL_54D11D5E7.1 70 RGNFSEEEERLIITLHASLGNK-WSTIATHLE-GRTDNEIKNYWNTH 114 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-21 | 7 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.323 | 10 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-27 | 12 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-10 | 14 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 15 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.33E-8 | 17 | 64 | No hit | No description |
PROSITE profile | PS51294 | 26.25 | 65 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-25 | 68 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-16 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-15 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.39E-12 | 72 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MGRSPCCCHD AGVKKGPWTE EEDKALVEHI QKRGGNVGSW RGLPKAAGLN RCGKSCRLRW 60 NNYLRSDIKR GNFSEEEERL IITLHASLGN KWSTIATHLE GRTDNEIKNY WNTHIRKKLL 120 RMGVDPVTHQ QLPPDQTNHD VNGAAAALLP EALLWAAAAA SLGGLDTGAL MQAQVLQQLL 180 QAIGSNNSTT GLIANLAAAN TLLNSSSSIV PNQMNYLQTG YLCNTSNFAE QHVVQQQLTN 240 DTSPGTSTFA AAERADQLCN TAASYNVAPA GDWSPAQEFG GLLEPMMELP GLCSLEGDSF 300 WKDILEDSYR L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-27 | 15 | 119 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM156904 | 1e-143 | AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene). | |||
GenBank | BT054398 | 1e-143 | BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds. | |||
GenBank | HQ858691 | 1e-143 | HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169245.1 | 0.0 | myb-related protein Zm38-like | ||||
TrEMBL | A0A3B6DIE2 | 0.0 | A0A3B6DIE2_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2DL_54D11D5E7.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6265 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 3e-68 | myb domain protein 9 |
Publications ? help Back to Top | |||
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