PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_474B433DF.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | CAMTA | ||||||||
Protein Properties | Length: 886aa MW: 98281.2 Da PI: 5.1935 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 172.8 | 4.9e-54 | 12 | 127 | 3 | 117 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 +e k+rwlk++e++ iL n+e+ ++t+e++++p+sg+l+Lynr++ r+frkDGy w++kkdg+tv E+he+LKvg++++l+cyYah+e Traes_2DL_474B433DF.1 12 REaKSRWLKPSEVYYILLNHEQLQITHEPPNKPPSGALFLYNRRVNRFFRKDGYAWRRKKDGRTVGEAHERLKVGNIDALSCYYAHGE 99 4559************************************************************************************ PP CG-1 90 enptfqrrcywlLeeelekivlvhylev 117 +np fqrrc+w+Le ++++ivlv+y+ev Traes_2DL_474B433DF.1 100 QNPYFQRRCFWMLEPAYDHIVLVQYREV 127 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 76.685 | 7 | 133 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.7E-69 | 10 | 128 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.4E-46 | 13 | 126 | IPR005559 | CG-1 DNA-binding domain |
CDD | cd00102 | 0.0078 | 448 | 532 | No hit | No description |
SuperFamily | SSF81296 | 6.84E-16 | 449 | 531 | IPR014756 | Immunoglobulin E-set |
Gene3D | G3DSA:2.60.40.10 | 6.1E-7 | 449 | 540 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 1.9E-7 | 449 | 530 | IPR002909 | IPT domain |
Gene3D | G3DSA:1.25.40.20 | 3.4E-15 | 641 | 735 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 7.15E-15 | 642 | 737 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.433 | 643 | 735 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.83E-9 | 648 | 735 | No hit | No description |
Pfam | PF12796 | 4.1E-6 | 657 | 736 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.167 | 676 | 708 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 9.9E-5 | 676 | 705 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50096 | 7.218 | 797 | 826 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.462 | 856 | 884 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 886 aa Download sequence Send to blast |
MSQSFDINVL LREAKSRWLK PSEVYYILLN HEQLQITHEP PNKPPSGALF LYNRRVNRFF 60 RKDGYAWRRK KDGRTVGEAH ERLKVGNIDA LSCYYAHGEQ NPYFQRRCFW MLEPAYDHIV 120 LVQYREVAEG RYYSTLSNGS AGSLSTLSYP NDIHGKHGST SDFSEGNESH QSSVTEVSSY 180 SANKEYNHDS GVLLSIPELQ QSTVMGIPEL DQSSLERSSE FCMVNNNDST NTSGLNQALK 240 SIAEQLSLGD DDYIYINQAR SLDFTTNTEA ADVQGNQTNN SLADDEANQI RPEGAHGVGR 300 GISSSWENVL QSDLGLPASS TYQFGAHYQQ SSEYQPPGGL DSSNLQLQIS AAKRFLLGSE 360 DTIDSPSYNF IPRDEGINGI NTLSAHDSSL ESCLNPDWQR TTPVTLQSSS YQSNSCGYEI 420 SEFFDNGQFE PSSEEDTRLA LKQKQQFSIR EISPEWAFCY EITKVIITGD FLCDPSNICW 480 AVMFGDTEVP VEIVQPGVLR CHTPLHSAGK LTLCITTGNR KVCSEIKDFE FRAKSTASSF 540 TDFAPSSMKS TEELSLIAKF ARILLCDNRS SAASGDDPQP GQSPKLKMNE DNWQRLINEL 600 DVGCENPLSR VDWIMEELLK SKLQQWLSLR LQGDDGTCSL SKNEQGIIHL ISALGYDWAL 660 SSVLGAGVGI NLRDSNGWTA LHWAAYYGRE KMVAALLAAG ASAPAVTDPT AQDPVGKSAA 720 FLASERGHVG LAGYLSEVAL TSYLASLTIE ESGISEGLAA IEAERAVESI SQRSAQLHGG 780 TEDELSLKDS LAAVRNAAQA AARIQNAFRA FSFRRRQHKD ARLKDEYGMT QEDIDELAAA 840 SRLYYQHHVS NGQFCDKAAV SIQKKYRGWK GRKNFLQMRR NVVKIQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369350 | 0.0 | AK369350.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2089K17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020147564.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X1 | ||||
TrEMBL | A0A3B6DE54 | 0.0 | A0A3B6DE54_WHEAT; Uncharacterized protein | ||||
STRING | EMT24284 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6238 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 1e-108 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |