PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_46C827FAC1.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 128aa MW: 14920.3 Da PI: 9.6071 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 53 | 6.3e-17 | 23 | 70 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRd+iN+++ L+ellP++ ++ +K+++L ++++Y+ksLq Traes_2DL_46C827FAC1.2 23 HNFSERRRRDKINEKLKALQELLPNC---TKVHTDKVSMLDEVIDYLKSLQ 70 99************************...9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.88E-20 | 16 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.06 | 18 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.31E-15 | 23 | 74 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-19 | 23 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-14 | 23 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.6E-17 | 24 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MEDGRALRRM SIPTRRSRSA DFHNFSERRR RDKINEKLKA LQELLPNCTK VHTDKVSMLD 60 EVIDYLKSLQ LQLQMLVMGK GMAHVVPPEL QQYMHYITTD PAAQLMQMPP SEPPQPFQIT 120 HANPPQRE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 31 | ERRRRD |
2 | 27 | 32 | RRRRDK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250458 | 1e-156 | AK250458.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf83b20, mRNA sequence. | |||
GenBank | AK250572 | 1e-156 | AK250572.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf86m18, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171332.1 | 5e-88 | transcription factor PIF1-like isoform X1 | ||||
Swissprot | Q0JNI9 | 3e-27 | PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 | ||||
TrEMBL | A0A3B6DKI9 | 1e-86 | A0A3B6DKI9_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453CYX7 | 1e-86 | A0A453CYX7_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8CF53 | 1e-86 | M8CF53_AEGTA; Transcription factor PIF3 | ||||
STRING | Traes_2DL_46C827FAC.2 | 1e-90 | (Triticum aestivum) | ||||
STRING | Traes_2DL_46C827FAC1.2 | 1e-90 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9562 | 30 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 3e-29 | phytochrome interacting factor 3 |
Publications ? help Back to Top | |||
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