PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_3C62DC707.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 57aa MW: 6457.36 Da PI: 10.6041 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.8 | 2.1e-07 | 27 | 53 | 1 | 25 |
TSSS-HHHHHHHHHHHHHTTTT..-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWk 25 +g+WT+eEd+ lv+ +++ Gg+ +W+ Traes_2DL_3C62DC707.1 27 KGPWTEEEDKTLVEHIQKRGGHvgSWR 53 79******************9988886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.01E-8 | 17 | 54 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.9E-9 | 18 | 53 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.601 | 22 | 57 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.3E-5 | 27 | 53 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 57 aa Download sequence Send to blast |
QRRSPSGRQR FVMGRSPCCC HDAGVKKGPW TEEEDKTLVE HIQKRGGHVG SWRGLPK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243271 | 7e-46 | AK243271.1 Oryza sativa Japonica Group cDNA, clone: J100049K04, full insert sequence. | |||
GenBank | AL662952 | 7e-46 | AL662952.6 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12, complete sequence. | |||
GenBank | AL731579 | 7e-46 | AL731579.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006A01, complete sequence. | |||
GenBank | AP014960 | 7e-46 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 7e-46 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855235 | 7e-46 | CR855235.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0142I02-OSIGBa0101B20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169249.1 | 1e-27 | transcription factor MYB39-like | ||||
Refseq | XP_020198492.1 | 1e-27 | transcription factor MYB39-like | ||||
TrEMBL | A0A287JBK5 | 1e-27 | A0A287JBK5_HORVV; Uncharacterized protein | ||||
STRING | Traes_2DL_3C62DC707.1 | 7e-35 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6265 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 4e-16 | myb domain protein 9 |
Publications ? help Back to Top | |||
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