PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_31EED5C94.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 416aa    MW: 45236.4 Da    PI: 7.5016
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_31EED5C94.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-163983147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           r +WT+eE++l+++a +++G   W++I +++g ++t+ q++s+ qk+
  Traes_2DL_31EED5C94.1 39 REKWTEEEHKLFLEAMQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 83
                           789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-153488IPR009057Homeodomain-like
PROSITE profilePS5129420.0233488IPR017930Myb domain
TIGRFAMsTIGR015576.8E-153786IPR006447Myb domain, plants
SMARTSM007174.9E-133886IPR001005SANT/Myb domain
PfamPF002491.7E-143982IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-103979IPR009057Homeodomain-like
CDDcd001672.81E-104184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MARFQETKPD LLNSGSDTRM MAEARLPKAR KPYMITKQRE KWTEEEHKLF LEAMQLHGRA  60
WRRIQEHIGT KTAVQIRSHA QKFFSKVTRD SSGDSGGSSS GAGPPIQIPP PRPKRKSVHP  120
YPCNLRSAQP GKRAPALLRV DKPQLSMCEQ GNGSPTSVVT TSQIGLGGSE SFDSDTSTID  180
VEERCPTPST GTAEVAVQAP PTNDSKKSKG SSSTSEEVVC DNASDAPVLK LFGKTVVVNE  240
SHQLPSPGTC DLQTAADMEL DTSSETLTSA PEANTWSPWL ANSQQFMYYV PQGAVFFGYN  300
NGSVPYPMSS SPKADQQHQH QASEAAAELR RREASSNTAS SSVAETTARN SAESCTGAVG  360
DDNEMVHAAG LRERVSPAFV QQRGFMPYKR CAAETKAMQP QAPREEADRE MTRLCL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3550060.0AK355006.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1014J06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193476.10.0protein REVEILLE 7-like
TrEMBLA0A453CXZ20.0A0A453CXZ2_AEGTS; Uncharacterized protein
TrEMBLW5BST90.0W5BST9_WHEAT; Uncharacterized protein
STRINGTraes_2DL_31EED5C94.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.12e-35MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]