PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_2DL_25FD0FFB4.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 229aa MW: 25443 Da PI: 9.5164 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.7 | 3.7e-15 | 15 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv+++++ Gg+ +W+ ++ g++R++k+c++rw +yl Traes_2DL_25FD0FFB4.1 15 KGPWTEEEDKTLVEYIQKRGGNvgSWRGLPKATGLNRCGKSCRLRWTNYL 64 79**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.7 | 2.3e-17 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T +E+ l++++++ lG++ W+tIa ++ gRt++++k++w+++ Traes_2DL_25FD0FFB4.1 70 RGNFTDDEERLIINLHASLGNK-WSTIATHLE-GRTDNEIKNYWNTH 114 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.266 | 10 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.0E-28 | 12 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-10 | 14 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-13 | 15 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-22 | 16 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.07E-7 | 17 | 64 | No hit | No description |
PROSITE profile | PS51294 | 26.938 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-15 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.05E-12 | 72 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-26 | 72 | 119 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MGRSPCCCQN SGVKKGPWTE EEDKTLVEYI QKRGGNVGSW RGLPKATGLN RCGKSCRLRW 60 TNYLRPDIKR GNFTDDEERL IINLHASLGN KWSTIATHLE GRTDNEIKNY WNTHIRKKLL 120 RMGVDPVTHK QLPPDQSRHH LNATSIAHHP EALLWAAAAA SLGSMDTGAL MLAQLVQQFL 180 QIIGSNNGTS GLIANLAAAN AMLNSRGSMV PNLQLQDQMN YLQLGYLCN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-27 | 10 | 119 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169243.1 | 1e-169 | transcription factor RAX1-like | ||||
Swissprot | Q9S9Z2 | 2e-67 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A3B6DJ46 | 1e-170 | A0A3B6DJ46_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2DL_25FD0FFB4.1 | 1e-171 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6265 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G16770.2 | 1e-73 | myb domain protein 9 |
Publications ? help Back to Top | |||
---|---|---|---|
|