PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2DL_23445B251.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 316aa MW: 36425.3 Da PI: 8.3592

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DL_23445B251.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.9	1.2e-21	11	94	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 k+Y +YA +vGFsvrk k+ ++g +r +vCs+eg+r+++ k r+ +etrtgC a++ + ++ +gk++vt+++++HnH+la Traes_2DL_23445B251.2 11 KYYVSYAGNVGFSVRKGLWDKTAKSG-SRSRFYVCSREGFRAKNLPK-----RPYPETRTGCPARFSIMLTPSGKYRVTEFVQDHNHQLA 94 69******************8888.8999*******98877.....9*********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-18	11	94	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.4E-29	191	284	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MVFESEEKAC KYYVSYAGNV GFSVRKGLWD KTAKSGSRSR FYVCSREGFR AKNLPKRPYP 60 ETRTGCPARF SIMLTPSGKY RVTEFVQDHN HQLAGPIDIG MLKSQRLLSK VQSGNGNAIS 120 IPPRYKNYLR TKSTKDMNAG DFRDLTDYFR SMKSDNPSFY YAIQVDENDK AANVFWADAR 180 SIFDYHYFSD VICFDMTYKL NDYSRPLALF LGMNHHRQMV IFGAAFLYDE TAESFKWLLE 240 TFKSAMCGKQ PKTILTDRSA ALKEALDLAW PGTVHRYCLW QIYQDAVKSL AHVFCISEEF 300 THDFSHCVFD VEDGQE

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK248528	0.0	AK248528.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf51g04, mRNA sequence.
GenBank	AK354472	0.0	AK354472.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1007L07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167791.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020167792.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A453CQK4	0.0	A0A453CQK4_AEGTS; Uncharacterized protein
TrEMBL	A0A453CQK7	0.0	A0A453CQK7_AEGTS; Uncharacterized protein
TrEMBL	A0A453CQM4	0.0	A0A453CQM4_AEGTS; Uncharacterized protein
TrEMBL	A0A453CQN0	0.0	A0A453CQN0_AEGTS; Uncharacterized protein
TrEMBL	A0A453CQN3	0.0	A0A453CQN3_AEGTS; Uncharacterized protein
STRING	Traes_2AL_163D42961.1	0.0	(Triticum aestivum)
STRING	Traes_2DL_23445B251.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-71	FAR1-related sequence 5

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]