PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_10A3AF467.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 722aa MW: 84084.7 Da PI: 8.7456 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.8 | 4.9e-25 | 31 | 121 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 Yn+YA+ GFsvr + +++ k ++e++ r+f+Cskeg+r e+ + t+++r++ra tr+gCka+l+++ + +g+w v+k++ HnH Traes_2DL_10A3AF467.1 31 HYNRYARAKGFSVRLDDKEYVKGTREVKARRFCCSKEGHRLEKYFQaTDQKREPRALTRCGCKAMLEIQHDAgRGQWFVKKFVDVHNH 118 6***************************************999877689999********************9*************** PP FAR1 88 ela 90 +la Traes_2DL_10A3AF467.1 119 PLA 121 *96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.4E-22 | 31 | 121 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.9E-33 | 243 | 337 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.495 | 524 | 563 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 722 aa Download sequence Send to blast |
MDGHSVSLEE IEEYHMMVSQ MFASENQGYE HYNRYARAKG FSVRLDDKEY VKGTREVKAR 60 RFCCSKEGHR LEKYFQATDQ KREPRALTRC GCKAMLEIQH DAGRGQWFVK KFVDVHNHPL 120 ADPDQSAFLR SHRRMNDAHK ADAVEYGLGG LRTFQIMNVA EKQHGGYPHV GYISRDLYNF 180 FARYKKKRIL GRDADFVLNH MRVQEERDAE FFFKYTTDDE GHLRNLFWAD SQSQIDYEAF 240 GDVVVFDSTY RVSRYNLPFV AFVGLNHHRS TVVFGIGVVS DETHKSYEWL LQTFVEAMGH 300 KEPISVITDG DSAMRKAIRK ILPRTDHRLC SWHIEQNMIR HLRNPMLDDF RKLIYCRMGV 360 YQFEKSWAEF KVNYEIEEEN EWMSRMYKLR KKWAAAYTKG RYFLGMQSNQ RSESLNSRLH 420 NHLDRKMSLV DVVEHTEHCI SRMRRNEAEL DAICSQSVPF TRIDACLLEI NVARIYTPKN 480 FKMVRDCIRR SCAWVIQEQT TVNDLVRYEV VLKDGAEGGS RRLFSVECSF DGSLMNGAFC 540 PCRKMECEAI PCAHIFAVLV FVRAATIPPC CVSKRWTMEA KAAFVSVRNA NTHVWSEEMS 600 RYRELRNIAS IALFKVSKSG ERSQEVKDYL QSIIDGPIEN DDNTEETTFG PIPSHYTAAS 660 HASADRVLDP KIVDTKGAPC KKRMKPFHET LRETNGRKKR TRRCGQCKSS EHDRRRCPDL 720 GK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 680 | 699 | KKRMKPFHETLRETNGRKKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167965.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453DAE7 | 0.0 | A0A453DAE7_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2DL_10A3AF467.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-93 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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