PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_0E9BE0271.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 82aa MW: 9423.79 Da PI: 7.5083 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.1 | 5.5e-10 | 33 | 56 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W+tIa ++ gRt++++k++w+++ Traes_2DL_0E9BE0271.1 33 RWATIATHLK-GRTDNEIKNYWNTH 56 5********9.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-13 | 32 | 73 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.49E-9 | 32 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.319 | 33 | 57 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 2.1E-7 | 33 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.10E-7 | 33 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
PPCTVNFFTV GFCIVVSPEA TLTCMDNYLV DVRWATIATH LKGRTDNEIK NYWNTHIRKK 60 LLRMGVDPVT HQQLPPDQTN HD |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light, UV, cold, drought, ethylene, jasmonic acid (JA), salicylic acid (SA), abscisic acid (ABA), cadmium (CdCl(2)), high salt (NaCl), and cytokinins. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:9839469}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF470090 | 7e-47 | AF470090.1 Zea mays P-type R2R3 Myb protein (Myb49) gene, complete cds. | |||
GenBank | BT034484 | 7e-47 | BT034484.1 Zea mays full-length cDNA clone ZM_BFc0173K04 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169245.1 | 3e-29 | myb-related protein Zm38-like | ||||
Swissprot | O49608 | 4e-17 | MYB32_ARATH; Transcription factor MYB32 | ||||
TrEMBL | A0A453CWB1 | 8e-31 | A0A453CWB1_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2DL_0E9BE0271.1 | 4e-56 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54230.1 | 5e-20 | myb domain protein 49 |