PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_0B54293DE.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 264aa MW: 29428.8 Da PI: 4.9471 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 63.5 | 6.7e-20 | 4 | 101 | 38 | 128 |
NAM 38 diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........tksgyWkatgkdkevlskkgelvglkktLvfykgrapkg 116 +i++++P++Lp vk + +fF+k ++y g+rk+r+ ++ +W++tgk++++l+++g +g kk++v+ kg + + Traes_2DL_0B54293DE.2 4 GICYTHPENLP-GVKLDGIASHFFHKICNAYDVGTRKRRKisnsdynvcDEHLRWHKTGKSRHILDNNGDIKGWKKIMVLRKGGYK-A 89 79*********.566677899******************756777666544778**************************987665.5 PP NAM 117 ektdWvmheyrl 128 ekt+W+mh+y+l Traes_2DL_0B54293DE.2 90 EKTNWTMHQYHL 101 8*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 21.883 | 1 | 120 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.15E-22 | 4 | 120 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-5 | 23 | 101 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MAEGICYTHP ENLPGVKLDG IASHFFHKIC NAYDVGTRKR RKISNSDYNV CDEHLRWHKT 60 GKSRHILDNN GDIKGWKKIM VLRKGGYKAE KTNWTMHQYH LGVDENEKDG ELVVCKVFFQ 120 LPSEKAGQCV MFAVDEESDS FAVKIDPTTP MTYPPQPCRP NGSPFETGQN QEEEEFRLSA 180 VRGAAEWLAG TSSHAIDDVA LPDLDEHPSR GGTPDAAYPE KQHLPLVDTD TLQGCPDAGT 240 PPDFSSLADL PIGSLDSFNW LDQE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357763 | 0.0 | AK357763.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1061G08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161769.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Refseq | XP_020187619.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Swissprot | Q6NQK2 | 2e-41 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A3B6DFM0 | 0.0 | A0A3B6DFM0_WHEAT; Uncharacterized protein | ||||
TrEMBL | M8CHC1 | 0.0 | M8CHC1_AEGTA; NAC domain-containing protein 8 | ||||
STRING | EMT26627 | 0.0 | (Aegilops tauschii) | ||||
STRING | Traes_2DL_0B54293DE.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 7e-44 | NAC family protein |