PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2DL_099D4CA9B.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 98aa MW: 10931.5 Da PI: 10.7993

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DL_099D4CA9B.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.3	1.4e-13	46	90	3	52
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIk 52 ++h + ErrRR+++N+ f L++l+P+ K++Ka+iL +++ Y++ Traes_2DL_099D4CA9B.1 46 KNHVISERRRREKLNEMFLILKSLVPSiH------KVDKASILAETIAYLR 90 6899*********************66......************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.078	43	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-15	45	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.56E-12	46	91	No hit	No description
Pfam	PF00010	4.9E-11	46	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-14	47	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-10	49	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
MGLGRSVAAP VDGESQKLLK KALASGAWAN NGGDDTARAQ ESINTKNHVI SERRRREKLN 60 EMFLILKSLV PSIHKVDKAS ILAETIAYLR DWSTRWRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	51	56	ERRRRE
2	52	57	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ747954	3e-80	KJ747954.1 Triticum aestivum MYC-like regulatory protein (Myc1) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020177997.1	3e-44	anthocyanin regulatory R-S protein-like
Refseq	XP_020177998.1	3e-44	anthocyanin regulatory R-S protein-like
Swissprot	P13027	1e-27	ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBL	A0A446ML80	4e-45	A0A446ML80_TRITD; Uncharacterized protein
STRING	Traes_2DL_099D4CA9B.1	2e-65	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP932	33	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.3	5e-17	bHLH family protein

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Perrot GH,Cone KC Nucleotide sequence of the maize R-S gene. Nucleic Acids Res., 1989. 17(19): p. 8003 [PMID:2798145] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]