PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_0393046A4.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 649aa MW: 72633.6 Da PI: 5.2608 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.8 | 3.7e-08 | 53 | 76 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +f++ G C Gd+C+F+Hgp Traes_2DL_0393046A4.1 53 MVPCYYFQK-GNCIKGDKCPFSHGP 76 789******.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.812 | 1 | 26 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.011 | 2 | 25 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.0023 | 5 | 24 | No hit | No description |
SMART | SM00356 | 1.6E-6 | 50 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.474 | 50 | 77 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-6 | 51 | 75 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-6 | 52 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-4 | 54 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 649 aa Download sequence Send to blast |
MNPRDCYYWL NGNCLNPKCS FRHPPIDGMF GATTPGIPAV SSHYAAYNSG KQMVPCYYFQ 60 KGNCIKGDKC PFSHGPQPAG NNPPEQVAKV SSFPSEQPQT QKNEFLGVKE FAQTNHLIQQ 120 GGPISDDRSK SVNRAAANFA RTAAAAIPAD LASSAVKSLP KSGRVQNSMP AANKSVGTSS 180 GEDHPECYQN NLPVETDPMQ DWNQPYQTPP QDDMPEDSRD ADDLLGESSP GFDVLVANDA 240 DAGAYMHDPD DFGRDIYPVE DYEYAPADFE IQPHHERELF NGMGEQGPIG QMYDGYDRKR 300 RRTSSERNLD RPSYSERRSR QRETGPVEID GSDLRHRLRR RKINGSPGIS PERSGESRRR 360 DDRYRERAYD GHRTHRDRHQ GPRGSTLSSR LQGRIKLPGR SPDRVDARSE RERDRSQLRD 420 RLSPVMPMDI QGGRHREAGH HQERIRQRSS ERASSARIAD GKHSRRNVTD SLNFASRKDF 480 GPESRKANGS VQSEASLDFE GPTPLSVILQ RKRQAASGNG NGSSAHNVKE DKSAAVSHRQ 540 AESLVEAEKE GYDNTISSEE YKSRSGDEEY KEEGQVPASS SHGDKAEAED IIEVENGEAD 600 NYDQRQGESE YEATEGYEYK SEDENAYQDD EEEFEDDDDF ARKVGVVFS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 297 | 301 | RKRRR |
2 | 297 | 302 | RKRRRT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375734 | 0.0 | AK375734.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3102P07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191143.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like | ||||
Swissprot | Q0J952 | 0.0 | C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A3B6DLN6 | 0.0 | A0A3B6DLN6_WHEAT; Uncharacterized protein | ||||
STRING | EMT21128 | 0.0 | (Aegilops tauschii) | ||||
STRING | Traes_2DL_0393046A4.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6604 | 32 | 41 |
Publications ? help Back to Top | |||
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