PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_02C9FBBB4.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Whirly
Protein Properties Length: 94aa    MW: 10310.8 Da    PI: 10.7854
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_02C9FBBB4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly53.74.4e-174494252
                 Whirly  2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekk 52
                           v+k+kaal++ +++p f++l+sg  +++r+G+++l++ +a+++rkyd+ kk
  Traes_2DL_02C9FBBB4.1 44 VFKGKAALSISPILPLFTKLESGGSRVNRNGSVMLTFFPAVGQRKYDYTKK 94
                           9***********************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.103.7E-233194IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544474.47E-203694IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.7E-174494IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
LFRGVTDLKD VLWSSSLTFK HALSTSAANV DESTSARKFA SYTVFKGKAA LSISPILPLF  60
TKLESGGSRV NRNGSVMLTF FPAVGQRKYD YTKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A3e-223594867Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B3e-223594867Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C3e-223594867Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D3e-223594867Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2499761e-112AK249976.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf60h16, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180430.11e-54single-stranded DNA-bindig protein WHY2, mitochondrial
SwissprotQ8VYF71e-21WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A3B6PHE23e-58A0A3B6PHE2_WHEAT; Uncharacterized protein
STRINGTraes_2DL_02C9FBBB4.16e-62(Triticum aestivum)
STRINGTraes_6BS_0A692E6F6.12e-60(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.15e-24WHIRLY 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]