PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_01DEC201E.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 532aa MW: 61158.2 Da PI: 9.1356 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 51.4 | 3.5e-16 | 118 | 197 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn Y+ e+GF vr +ks+ + + + +++ vC + gk+ +e+++ +tr+gC+a++++ +++d+ w++++ + +HnH+ Traes_2DL_01DEC201E.2 118 EFYNLYSWECGFGVRLAKSRLNVER-KRCMQEIVCACAGKPLRENSR---------STRCGCNAMIRLLRSNDKGWYIAEHKDDHNHP 195 6*****************9999554.578899********9987655.........9******************************* PP FAR1 89 la 90 l+ Traes_2DL_01DEC201E.2 196 LS 197 96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-12 | 118 | 197 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.6E-29 | 320 | 412 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence Send to blast |
MSTNGVEVNR MCAAPGAMSS SFFPVESQDS MSVLNGAVCA AGCARPPVDA GVGKVCSEAT 60 SGWTRRVRVG KAPEEREMNP NRISALELSV RAYAEKRDGT VVYPSIGTSF DSLDEAYEFY 120 NLYSWECGFG VRLAKSRLNV ERKRCMQEIV CACAGKPLRE NSRSTRCGCN AMIRLLRSND 180 KGWYIAEHKD DHNHPLSLTC GQKMHWKSHK HIDRYTKDLV KQLRDNNVGL GKVFNIVGSF 240 FGTADKVPFT KRSLKTLCRK LNREQSDMDA VKRMAVLAEM KANDPDFNYT VQVDGESRVK 300 TLMWVTSRGF DQYRCFGDAI TFDTTYRTNL YDMPFGLFVG VNNHFQSIIF GGAMMRDEKE 360 DTFKWIFKEF IRMVGGKHPQ TIITDQARAM ELAIEAKLPN TVHHWCKWHV LKKAKESMGV 420 LWSKNSDFKM EFHKLVHHMI TEEEFEAGWQ QMLERYSLKK HPFLTQIYEV RHKWAKHFRG 480 VFCAKMTSTQ RSESANHMLK GYMPPGCPMH LFLKQFEKLQ FDRESEQSFQ EK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155776.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1D5URD4 | 0.0 | A0A1D5URD4_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2DL_01DEC201E.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-66 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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