PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_01D9C842D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TCP | ||||||||
Protein Properties | Length: 77aa MW: 8373.35 Da PI: 5.5942 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 75.2 | 2e-23 | 1 | 62 | 21 | 80 |
TCP 21 RvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaessss 80 RvRls+ +a++f+dLqd+LG+d++sk++eWL+++a +ai++l+++ +++ss Traes_2DL_01D9C842D.1 1 RVRLSVATAIQFYDLQDRLGYDQPSKAVEWLIKAAAAAIDKLPELdaaafpnhpasA---------NKQSS 62 9********************************************666553332210.........11111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 23.835 | 1 | 42 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.5E-22 | 1 | 70 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
RVRLSVATAI QFYDLQDRLG YDQPSKAVEW LIKAAAAAID KLPELDAAAF PNHPASANKQ 60 SSALHAEVDG SQLQQQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-21 | 1 | 43 | 13 | 55 | Putative transcription factor PCF6 |
5zkt_B | 7e-21 | 1 | 43 | 13 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370348 | 1e-100 | AK370348.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2109C05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165443.1 | 8e-46 | transcription factor PCF6-like | ||||
Swissprot | A2XMN1 | 5e-21 | PCF6_ORYSI; Transcription factor PCF6 | ||||
Swissprot | Q10CE8 | 5e-21 | PCF6_ORYSJ; Transcription factor PCF6 | ||||
TrEMBL | A0A1D5UKV2 | 2e-44 | A0A1D5UKV2_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2DL_01D9C842D.1 | 3e-48 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 8e-20 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Publications ? help Back to Top | |||
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