PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BS_F1B450FA4.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 732aa MW: 79145.6 Da PI: 4.5876 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.3 | 4.2e-14 | 30 | 74 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W++eEd+ l ++ +G+++W+ Ia + +t+ qc+ rw++yl Traes_2BS_F1B450FA4.2 30 SWSAEEDDVLRAQIAHHGTDNWTVIATQFK-DKTARQCRRRWYNYL 74 6****************************9.**************7 PP | |||||||
2 | Myb_DNA-binding | 41.2 | 3.9e-13 | 80 | 123 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W+ eEd ll +a k+lG++ W+ Ia+ + gRt++ +k+r+ + Traes_2BS_F1B450FA4.2 80 KGGWSREEDMLLCEAQKLLGNK-WTEIAKVVS-GRTDNAVKNRFST 123 688*******************.*********.**********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.24 | 23 | 78 | IPR017930 | Myb domain |
SMART | SM00717 | 6.3E-13 | 27 | 76 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.8E-26 | 27 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.79E-13 | 30 | 74 | No hit | No description |
Pfam | PF13921 | 3.5E-15 | 31 | 91 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-19 | 31 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.988 | 79 | 129 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-13 | 79 | 127 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-19 | 82 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.19E-9 | 83 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009553 | Biological Process | embryo sac development | ||||
GO:0010052 | Biological Process | guard cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MATGPDLTSP SAADAAAASS AAKKDRHIVS WSAEEDDVLR AQIAHHGTDN WTVIATQFKD 60 KTARQCRRRW YNYLNTECKK GGWSREEDML LCEAQKLLGN KWTEIAKVVS GRTDNAVKNR 120 FSTLCKRRAK DDELLEENGT VCSNASAKRV LTQSGGVTCA APGSSPPIKN MSSCKPDFKE 180 NLAPNMRSFG QQKSIRQDSR QPLASICPDN QSVNIVKTQS LVTKTSTKQL HGEEQSCVKH 240 DGNFLKRNDP KLATLLQQAD LLSSLATKVN TENTSQSMDE AWQKLQHHLV KKDDNDMSES 300 SMSGTASLLD DLDDLIVDPY ENEEEDEQKS REQNGATSQV APDQIMDNCP VDQIAEESSL 360 CGNTLSSTME PCPVAEILAH INLGEAAEDM GLHFMEYSSP THAAQAQQAK ADAEIPASVD 420 LSESAEVQAQ QAKADAEIPV SVDLSEAAEG SWSQFMEYTS PAHTVLHAEG DAETPASVKL 480 SEAAEGSLPQ CMEHMSPAHT LLRAKTDSEI PASANSNEAA EGSWSQFMEY MSPAHIVLHA 540 KADAETPASV NLGEAAEGSL PQCMEPMSPA HTLLRAKTDY EIPASANLSE AAKDDSLQCT 600 EYTSPARADL QANADAEISE DFSEVAQDSR LQCAKFTSPA HTAIKGKAVA KKGTSENCSD 660 VPEDSSTQPC MEFTSPAHTV PTFHPFTDNV PTPKITASER NFLLSVLELA SPGSKPETSQ 720 QPSCKRALLN SL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 31 | 128 | 10 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00259 | DAP | Transfer from AT2G02820 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951913 | 0.0 | JF951913.1 Triticum carthlicum clone TaMYB30 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020160174.1 | 0.0 | transcription factor MYB124-like isoform X3 | ||||
TrEMBL | A0A3B6C276 | 0.0 | A0A3B6C276_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BS_F1B450FA4.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8903 | 38 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02820.1 | 3e-70 | myb domain protein 88 |
Publications ? help Back to Top | |||
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