PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BS_E3CBE0B73.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRF | ||||||||
Protein Properties | Length: 263aa MW: 28140.2 Da PI: 4.4276 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 71.3 | 1.2e-22 | 174 | 214 | 1 | 41 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrk 41 ++epgrCrRtDGKkWRC+r++++++k+CErH+hrgr+r + Traes_2BS_E3CBE0B73.1 174 EPEPGRCRRTDGKKWRCWRKTIPNEKYCERHMHRGRKRPVQ 214 69***********************************9765 PP | |||||||
2 | QLQ | 54.2 | 4.5e-19 | 108 | 143 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k Traes_2BS_E3CBE0B73.1 108 SFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 143 8*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.7E-8 | 107 | 143 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.018 | 108 | 143 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.2E-12 | 108 | 142 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 22.126 | 174 | 218 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.2E-18 | 175 | 212 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MAAEGEDKKD ANSVGGGGGE NTLESAEEAI LQAVGQEPGQ ELEGEAEESA DREGNGDDAG 60 KEDSGCKDLV LVEDPVLLED PEEAVATAAL QEEMRALLAS VPEGAGASFT AMQLQELEQQ 120 SRVYQYMAAR VPVPTHLVFP IWKSVTGASS EGAQNYPTLM GLATLCLDFG KSPEPEPGRC 180 RRTDGKKWRC WRKTIPNEKY CERHMHRGRK RPVQVIVEDD EPDSASGSKS SSGKVTEGGK 240 KTDDKSSSSK KLAVAAPAAV EFT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249458 | 0.0 | AK249458.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf29g18, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153628.1 | 1e-175 | growth-regulating factor 11-like | ||||
Swissprot | A5HEG9 | 1e-136 | GRF10_MAIZE; GRF-interacting factor 10 | ||||
TrEMBL | A0A1D5UD70 | 0.0 | A0A1D5UD70_WHEAT; Growth regulating factor 8-B1 | ||||
TrEMBL | A0A446M7A7 | 0.0 | A0A446M7A7_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BS_E3CBE0B73.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6735 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-30 | growth-regulating factor 5 |
Publications ? help Back to Top | |||
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