PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_2BS_E1E541767.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 360aa MW: 38214.3 Da PI: 6.4286 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l + ++++G+g+W++I++ g+ R++k+c++rw +yl Traes_2BS_E1E541767.1 14 RGLWSPEEDEKLMNHIAKYGNGCWSSIPKIAGLERCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.8e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eE++l+++++ lG++ W+ Ia+ ++ gRt++++k++w+++ Traes_2BS_E1E541767.1 67 RGAFSQEEEDLIIHLHSILGNK-WSQIAAQLP-GRTDNEVKNFWNSF 111 89********************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.731 | 9 | 61 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 9 | 64 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.67E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.45E-12 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.239 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.31E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 360 aa Download sequence Send to blast |
MSKRPGGTKK RLKRGLWSPE EDEKLMNHIA KYGNGCWSSI PKIAGLERCG KSCRLRWINY 60 LRPDLKRGAF SQEEEDLIIH LHSILGNKWS QIAAQLPGRT DNEVKNFWNS FIKKKLRQRG 120 IDPATHKPLA PASAPPAATP VSRSAVFSEA ELILSSPVGG QHMPPLVSAE SYVYSRGSMD 180 GAGGVVGGCS DDVSLSSLSG YNNNNQTADF AGYLDADALH GGVIPSVSSS STLNSMAGVS 240 PGGAANTNAT TDELCCNNNP SNSGSGFESS TTQSSSNHHL PWLELGSISS CTEDASGAGA 300 GADHYGAALD ELKWSDYVFD GGYQQYHQQG QCIYGDSKAA ADAAAAQFDA HGLGINWCLN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-29 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK353785 | 0.0 | AK353785.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1002L23. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154053.1 | 0.0 | transcription factor MYB3-like | ||||
TrEMBL | A0A453AZK8 | 0.0 | A0A453AZK8_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2BS_E1E541767.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3092 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G01680.3 | 3e-69 | myb domain protein 55 |
Publications ? help Back to Top | |||
---|---|---|---|
|