PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_D007D6598.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 554aa    MW: 61327.3 Da    PI: 6.3716
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_D007D6598.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.41.1e-1331845531373
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            l+elLl+cA+av+++++ +++ ++ +l++++s +g+p++Rl ay++e+L arla+s++++ykal+++e +   ss+ l+++++++e++
  Traes_2BS_D007D6598.1 184 LKELLLACARAVEEKNMYAVDVMVPELRKMVSVSGTPLERLGAYMVEGLVARLASSGHSIYKALRCKEPK---SSDLLSYMHFLYEAC 268
                            5799*****************************************************************9...9************** PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                            P++kf+++ aN aI eav+ge+r+HiiDf i qG+QW++LlqaLa+Rp+gpp++RiTg++++ s   +   l  +g+rL+++A  ++v
  Traes_2BS_D007D6598.1 269 PYFKFGYMSANGAIAEAVKGEDRIHIIDFHIAQGAQWISLLQALAARPGGPPTVRITGLDDSVSAyaRGGGLDLVGRRLSHIAGLCKV 356
                            *************************************************************888899999****************** PP

                   GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                            pfef+  va + e++e  +L v pgEalaVn+ l+lh+++de+vs++++rd++L+lvksl+Pkv+++veqe+++n+++F +rf+e+le
  Traes_2BS_D007D6598.1 357 PFEFHS-VAMAGEEVEEGHLGVIPGEALAVNFTLELHHIPDETVSTANHRDRILRLVKSLRPKVLTLVEQESNTNTAPFPQRFAETLE 443
                            ******.7999***************************************************************************** PP

                   GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                            yy+a+f+s++ +lpr+++er+++E+++l+re+vn++acegaer+erhe ++kW++rl++aGF+p pls+ +++++++ll+ ++++ y+
  Traes_2BS_D007D6598.1 444 YYTAIFESIDLTLPRDDKERVNMEQHCLAREVVNLIACEGAERVERHEVFGKWKARLTMAGFRPSPLSSLVNATISTLLQSYSEN-YK 530
                            ***********************************************************************************55.** PP

                   GRAS 351 veeesgslvlgWkdrpLvsvSaW 373
                            + e++g+l+lgWk++pLv+ SaW
  Traes_2BS_D007D6598.1 531 LAERDGALYLGWKNKPLVVSSAW 553
                            *********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.305158535IPR005202Transcription factor GRAS
PfamPF035143.7E-131184553IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MADTPTSRMI HPFSNMQGQN PKQFQFQYSD NPQHPCRPYQ PSPDTHVVPQ HHYSLKSHSS  60
DASYENQVAQ MKHTLDSSAA DGYMRHDSPS SHSFTPPSIR SGSGSPSSHD DSHSDSTNGS  120
PVSASCVTVT EDPNDLKQKL KDLEAEMLGP DAEIVNSLES SVAKQLSLEP EKWAQMMDFP  180
RGNLKELLLA CARAVEEKNM YAVDVMVPEL RKMVSVSGTP LERLGAYMVE GLVARLASSG  240
HSIYKALRCK EPKSSDLLSY MHFLYEACPY FKFGYMSANG AIAEAVKGED RIHIIDFHIA  300
QGAQWISLLQ ALAARPGGPP TVRITGLDDS VSAYARGGGL DLVGRRLSHI AGLCKVPFEF  360
HSVAMAGEEV EEGHLGVIPG EALAVNFTLE LHHIPDETVS TANHRDRILR LVKSLRPKVL  420
TLVEQESNTN TAPFPQRFAE TLEYYTAIFE SIDLTLPRDD KERVNMEQHC LAREVVNLIA  480
CEGAERVERH EVFGKWKARL TMAGFRPSPL SSLVNATIST LLQSYSENYK LAERDGALYL  540
GWKNKPLVVS SAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-641885548375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3641790.0AK364179.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022G24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176499.10.0chitin-inducible gibberellin-responsive protein 2-like
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A3B6C5V60.0A0A3B6C5V6_WHEAT; Uncharacterized protein
TrEMBLA0A446M3850.0A0A446M385_TRITD; Uncharacterized protein
STRINGTraes_2BS_D007D6598.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]