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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Traes_2BS_C94BD2E9F.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | Dof | ||||||||
| Protein Properties | Length: 323aa MW: 33152.6 Da PI: 7.6505 | ||||||||
| Description | Dof family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-Dof | 124 | 4.8e-39 | 14 | 73 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
+al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+s+
Traes_2BS_C94BD2E9F.1 14 AEALRCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRSR 73
57899****************************************************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| ProDom | PD007478 | 6.0E-27 | 11 | 62 | IPR003851 | Zinc finger, Dof-type |
| Pfam | PF02701 | 1.4E-33 | 16 | 71 | IPR003851 | Zinc finger, Dof-type |
| PROSITE profile | PS50884 | 29.385 | 17 | 71 | IPR003851 | Zinc finger, Dof-type |
| PROSITE pattern | PS01361 | 0 | 19 | 55 | IPR003851 | Zinc finger, Dof-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 323 aa Download sequence Send to blast |
GGGGTGGAVA DPRAEALRCP RCDSANTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV 60 PVGGGCRKNK RSRSSNGSGG RPGSCAVVAS TNAAAGGITS STSMSLPPPG SLSSALGLHG 120 HGSSSLASLL LGSGASGGDH LGLFHAMQSV VSDATAYEMH QQHQTQVDQL LGLGYGAGDA 180 NGSQIHIKPW QQHLQDGAGG LFDGFYAPLL SGSIVPGLEE LHVKAEATAG EHHHHHHQKK 240 ATDGDQQSWD QHPTSSSNVE ANIMASDALM AAAAAASMNP AVSNAATAPT SSPLMYWGNG 300 NIGGSPAAWP DMANCGSSIA TFF |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK368979 | 0.0 | AK368979.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083D03. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020159095.1 | 0.0 | dof zinc finger protein DOF5.8-like | ||||
| TrEMBL | A0A3B6C735 | 0.0 | A0A3B6C735_WHEAT; Uncharacterized protein | ||||
| TrEMBL | A0A446M6L9 | 0.0 | A0A446M6L9_TRITD; Uncharacterized protein | ||||
| STRING | Traes_2BS_C94BD2E9F.1 | 0.0 | (Triticum aestivum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP8895 | 30 | 41 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G28310.1 | 1e-28 | Dof family protein | ||||
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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