PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2BS_C9299F976.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 889aa MW: 98030.1 Da PI: 7.5681

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BS_C9299F976.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.7	2.9e-21	76	177	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerr............traetrtgCkaklkvkkek 72 +fY+ YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk + + + +rtgC a+l++k+ Traes_2BS_C9299F976.2 76 EFYKVYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqdetN----AtdvtvaapppppRCPDSRTGCLASLTIKLLP 158 6***************99997666.************999955550....24455556666668899*********99 PP FAR1 73 .dgkwevtkleleHnHela 90 + ++vt+++ eHnH+la Traes_2BS_C9299F976.2 159 sANAFRVTEFVAEHNHPLA 177 899************97 PP
2	FAR1	69.9	6.2e-22	225	324	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkw 76 fYn+YA++vGFsvr+s++k++ +g i++r fvCs+eg +++ k++ + r + trtgC+a++++k + ++ Traes_2BS_C9299F976.2 225 FYNRYAEHVGFSVRRSYKKRK--HGVIVSRIFVCSREGVSDRAKHDglasistnagggaPGTPRPGPPPTRTGCQARMVIKITPCRTY 310 9***********9976655..9**************9999**99999977777778899*************** PP FAR1 77 evtkleleHnHela 90 +v+k+ eHnH+la Traes_2BS_C9299F976.2 311 RVAKFIAEHNHPLA 324 **********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-18	76	177	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	6.5E-19	225	324	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.6E-21	413	506	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.014	681	728	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.0E-6	681	727	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.0E-6	703	730	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 889 aa Download sequence Send to blast
MSTTAHPPAS LSGDSSPTTS GSSSPSSSAF VAGSDEPALL GPATSTSTPS AAGDDAAVPS 60 SPQMGMYFET EDDAYEFYKV YAARLGFVVR KSNKSKNSRH TVTRRLFVCS KQGFRQEPKK 120 PQDETNATDV TVAAPPPPPR CPDSRTGCLA SLTIKLLPSA NAFRVTEFVA EHNHPLASAV 180 SAVSLAMIPS SSSHHTIAAA ASLPDPRDGP LPEMHFETED DAYAFYNRYA EHVGFSVRRS 240 YKKRKHGVIV SRIFVCSREG VSDRAKHDGL ASISTNAGGG APGTPRPGPP PTRTGCQARM 300 VIKITPCRTY RVAKFIAEHN HPLANSETVH KLRSHKMRAR GHELGAGELH RRKQGKGVQL 360 GDAGAALEYL EGLQVGNPSL YYAVGMAPDG NSAVNFFWAD AKSIIDFRSF GDVVCFDTTY 420 GLNVYGRPFA LFVGVDNHKQ LLVFGAALLY DDGIQSLKWV FQAFADAMRD RQPKTILIDE 480 RSECAIAAAE VWPGSNHCTS VWHIYHSSKR HLKQVFESSK SFGNALSQCL FDCEDEMEFL 540 SAWEKLIEKH DIGESEWLSR LFLEKEKWAL PYRRTVFSAD ILSTLRKDSM INELKRELSE 600 QEDILLFFKR YETMLEEHRS KKLQADVDGN QVTLPIPSLR MLKQSSNAYT PEAFKMFQGE 660 FEAYMNCMSF PCSAVGTVSE YKITLDEKPS EGIVKFDALD GLATCSCRKF ESVGIQCCHV 720 LKVLDLKNIK ELPEQYILKR WRKDARSVRM GEEPNCGSSS IMRSSLDVRF SNMCRMVSLI 780 ASRAAKSEEA MSYIESQSSV LLKHLDEILQ TGYPENGNHD VASSSQAISF VGNHPDHTTQ 840 ARAVAHTANG LTSLLGISAY PESSGQLKVL ICCHVDVSKY ILKTLLFPI

Sequence ? help Back to Top

Protein Sequence Length: 889 aa Download sequence Send to blast

MSTTAHPPAS LSGDSSPTTS GSSSPSSSAF VAGSDEPALL GPATSTSTPS AAGDDAAVPS  60
SPQMGMYFET EDDAYEFYKV YAARLGFVVR KSNKSKNSRH TVTRRLFVCS KQGFRQEPKK  120
PQDETNATDV TVAAPPPPPR CPDSRTGCLA SLTIKLLPSA NAFRVTEFVA EHNHPLASAV  180
SAVSLAMIPS SSSHHTIAAA ASLPDPRDGP LPEMHFETED DAYAFYNRYA EHVGFSVRRS  240
YKKRKHGVIV SRIFVCSREG VSDRAKHDGL ASISTNAGGG APGTPRPGPP PTRTGCQARM  300
VIKITPCRTY RVAKFIAEHN HPLANSETVH KLRSHKMRAR GHELGAGELH RRKQGKGVQL  360
GDAGAALEYL EGLQVGNPSL YYAVGMAPDG NSAVNFFWAD AKSIIDFRSF GDVVCFDTTY  420
GLNVYGRPFA LFVGVDNHKQ LLVFGAALLY DDGIQSLKWV FQAFADAMRD RQPKTILIDE  480
RSECAIAAAE VWPGSNHCTS VWHIYHSSKR HLKQVFESSK SFGNALSQCL FDCEDEMEFL  540
SAWEKLIEKH DIGESEWLSR LFLEKEKWAL PYRRTVFSAD ILSTLRKDSM INELKRELSE  600
QEDILLFFKR YETMLEEHRS KKLQADVDGN QVTLPIPSLR MLKQSSNAYT PEAFKMFQGE  660
FEAYMNCMSF PCSAVGTVSE YKITLDEKPS EGIVKFDALD GLATCSCRKF ESVGIQCCHV  720
LKVLDLKNIK ELPEQYILKR WRKDARSVRM GEEPNCGSSS IMRSSLDVRF SNMCRMVSLI  780
ASRAAKSEEA MSYIESQSSV LLKHLDEILQ TGYPENGNHD VASSSQAISF VGNHPDHTTQ  840
ARAVAHTANG LTSLLGISAY PESSGQLKVL ICCHVDVSKY ILKTLLFPI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179680.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020179681.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020179682.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020179683.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A446M765	0.0	A0A446M765_TRITD; Uncharacterized protein
STRING	Traes_2BS_C9299F976.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-83	FAR1-related sequence 5

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]