PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_BD0ED621D.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 238aa    MW: 25888.9 Da    PI: 7.6004
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_BD0ED621D.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.4e-1961113456
                            -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            ++++t+eq++ Le  F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
  Traes_2BS_BD0ED621D.2  61 KRRLTDEQVHSLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHK 113
                            5689***********************************************99 PP
2HD-ZIP_I/II114.66.2e-3760149291
            HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                            kkrrl++eqv++LE sF+ee+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+k+k +E+++++Lk+a+da   ++++Le+ev +L+e
  Traes_2BS_BD0ED621D.2  60 KKRRLTDEQVHSLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHKSKLMEEEFAKLKHAHDAAILHKCHLENEVLRLKE 147
                            9**************************************************************************************9 PP

            HD-ZIP_I/II  90 el 91 
                            +l
  Traes_2BS_BD0ED621D.2 148 RL 149
                            87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-1754114IPR009057Homeodomain-like
PROSITE profilePS5007116.13155115IPR001356Homeobox domain
SMARTSM003893.1E-1658119IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.9E-1860113IPR009057Homeodomain-like
CDDcd000861.89E-1560115No hitNo description
PfamPF000463.7E-1661113IPR001356Homeobox domain
PRINTSPR000311.2E-58695IPR000047Helix-turn-helix motif
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PRINTSPR000311.2E-595111IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDKQQVFGSS YVDMPFFAAN GAATAQGESR PRARRRRRRA ARCGRGDGDG GEMDGGGDLK  60
KRRLTDEQVH SLELSFREER KLETGRKVHL AAELGLDPKQ VAVWFQNRRA RHKSKLMEEE  120
FAKLKHAHDA AILHKCHLEN EVLRLKERLG ATEEEVRRLR SAAGSHGASG DGGDAAGAVG  180
ACGGSPSSSF STGTCQQHPG FSGADVLGPD DDLMMCVPEY GGYADSSVVE WFSLYGLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12938RPRARRRRRR
23341RRRRRRAAR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4902340.0AB490234.1 Hordeum vulgare subsp. vulgare HvHox2 mRNA for homeodomain leucine zipper protein class 1, complete cds.
GenBankAK3684640.0AK368464.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2074A10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155462.11e-129homeobox-leucine zipper protein HOX14-like
SwissprotQ7XI857e-93HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBLA0A3B6C3A81e-172A0A3B6C3A8_WHEAT; Uncharacterized protein
STRINGTraes_2BS_BD0ED621D.21e-174(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.19e-39homeobox protein 40
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]