PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BS_AF4D5351B.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | CAMTA | ||||||||
Protein Properties | Length: 99aa MW: 11874.5 Da PI: 10.3003 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 149.4 | 8.9e-47 | 2 | 98 | 2 | 98 |
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 + ++rwlk++e++ iL n+e+ ++t+e++++p+sgsl+Lynr++ r+frkDGy w++kkdg+tv E+he+LKvg+v++l+cyYah+e+n Traes_2BS_AF4D5351B.1 2 KEARSRWLKPSEVYYILLNHEQLHITHEPPNKPPSGSLFLYNRRVNRFFRKDGYAWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQN 91 3459************************************************************************************** PP CG-1 92 ptfqrrc 98 p fqrrc Traes_2BS_AF4D5351B.1 92 PYFQRRC 98 ******9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01076 | 4.8E-48 | 1 | 99 | IPR005559 | CG-1 DNA-binding domain |
PROSITE profile | PS51437 | 65.142 | 1 | 99 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 2.1E-40 | 3 | 98 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
LKEARSRWLK PSEVYYILLN HEQLHITHEP PNKPPSGSLF LYNRRVNRFF RKDGYAWRRK 60 KDGRTVGEAH ERLKVGNVDA LSCYYAHGEQ NPYFQRRCL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369350 | 1e-110 | AK369350.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2089K17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020147564.1 | 3e-62 | calmodulin-binding transcription activator 4 isoform X1 | ||||
Refseq | XP_024311654.1 | 3e-62 | calmodulin-binding transcription activator 4 isoform X4 | ||||
Swissprot | Q6NPP4 | 5e-43 | CMTA2_ARATH; Calmodulin-binding transcription activator 2 | ||||
TrEMBL | A0A453BV98 | 2e-65 | A0A453BV98_AEGTS; Uncharacterized protein | ||||
STRING | EMT24284 | 3e-63 | (Aegilops tauschii) | ||||
STRING | Traes_2BS_AF4D5351B.1 | 5e-69 | (Triticum aestivum) | ||||
STRING | Traes_2DL_474B433DF.1 | 1e-63 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15485 | 8 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 2e-45 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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