PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BS_A61094919.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 797aa MW: 88660.7 Da PI: 7.9069 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.1 | 1.6e-18 | 293 | 392 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d sg++W +++++ +++s++yvl+ G ++ +L++gD+v F++ Traes_2BS_A61094919.2 293 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDASGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMHLQAGDTVSFSR 379 89**************************555566778***************9989999999***9.********************9 PP -SSSEE..EEEEE- CS B3 85 dgrsefelvvkvfr 98 ++ e++lv+++++ Traes_2BS_A61094919.2 380 ID-PEGKLVMGFRK 392 87.67767777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.1E-31 | 287 | 399 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.36E-21 | 290 | 396 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.19E-23 | 291 | 392 | No hit | No description |
Pfam | PF02362 | 2.0E-15 | 293 | 392 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.265 | 293 | 394 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.3E-22 | 293 | 393 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.128 | 549 | 599 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 8.7E-11 | 554 | 596 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 797 aa Download sequence Send to blast |
MAPSQMWSTP TVHMSQNVAD RKDSYVKSWR PPTGQISSQW RQNHQLWNMS TIQADLQQRL 60 AYEFDRPSGS EKLPPGRTFI HAQEKKSDDM HDRPTTPAGM GLIIRDRYAN GLGQQTSMDP 120 THSSTPYQRE GPNPNSLHDP SHHVGESDPL SSRKGIISDG GSTVSTGFKL DPHHPSILKD 180 DAASTLPTMG GYTITNYPPV PGRSDHLRII PNNPQQPPTT VPLSVVQKQF YSHSVIEPNY 240 QAQFRNGKPR MDPKARSELL PRYWPRITDK ELQHLSGEYP KNSNSNSVIT PLFEKMLSAS 300 DAGRIGRLVL PKKCAEAYFP PISQPEGLPL KVQDASGKEW VFQFRFWPNN NSRMYVLEGV 360 TPCIQSMHLQ AGDTVSFSRI DPEGKLVMGF RKTKTQEQIF RQEEPTKPAN AAPNLPDVNV 420 NVTAPDSSPN SSLVRPNKVN TENKDSSPVE QAASKIDKGG VAQKEGSGTV RTSPGPVKRK 480 ATSIGPKIKR FRIDNEESME LKITWEEAQE LLRPPLKAPS VVIVDGHEFE EYEEPPVLGR 540 KTYFVTDQSG ENHQWAQCED CSKWRKLPVD ALLPSKWTCS DNKWDPERTT CVSPQEASME 600 ELAELIPIKA GAAKKAKLRM DTDSIDVSDG LDTLANLAIL GEGESLPSQP TTKHPRHRPG 660 CSCIVCIQPP SGKGPKHKQT CTCNVCMTVR RRFRTLMLRR EKRASEKESD ELPRKKEQGQ 720 SSESIPQDPL PASTSPSSTP QKVSGNGDDA EEAMEHTMAS SPMKNQIDLN IQPEREDEQS 780 PKSDAVGAMR LPRENAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 1e-62 | 265 | 393 | 2 | 124 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159212.1 | 0.0 | B3 domain-containing protein Os07g0563300-like isoform X1 | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A446M4U8 | 0.0 | A0A446M4U8_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BS_A61094919.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7490 | 36 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-146 | HSI2-like 1 |
Publications ? help Back to Top | |||
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