PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_9C5982D89.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 321aa    MW: 35963.7 Da    PI: 6.9237
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_9C5982D89.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003283304223
                            EETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                            +C++C+k F  ++ Lk H+r  +
  Traes_2BS_9C5982D89.1 283 RCEYCNKQF-YPEKLKIHLRYyC 304
                            7********.*********9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525401.8E-23104275IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM004873.3E-6139320IPR014001Helicase superfamily 1/2, ATP-binding domain
Gene3DG3DSA:3.40.50.3006.8E-17142273IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF001763.0E-22159274IPR000330SNF2-related, N-terminal domain
CDDcd000462.31E-7163269No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MPRRNGNASG SGSSRRRRRD DDDDESVPSD NTSDSDFVAD MEDEVADDDE EFASDEDAPA  60
PAVVIEVVAP RPVLSPRPPK SKWRRKKKKG KRDEDGPPLP WEEWEEANTK WLDERAGAVE  120
ETDAPTAGVV PTAEPAPEVL LQLLRFQKEW LAWALAQEAS VSRGGILADE MGMGKTIQGI  180
ALVLTARRLR PPGSPPPSPP SPSLGLPMRR VGCTLVICPV VAVIQWAQEI ERHTAKGSAR  240
VLLYHGARRG SQKYDFDTFD FVVTTYSTIE ADYRKHIMPP KIRCEYCNKQ FYPEKLKIHL  300
RYYCGPDALR TEKQAKQKSK K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18388RRKKKK
28391RRKKKKGKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3703820.0AK370382.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2109L06.
GenBankAK3710670.0AK371067.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2123P24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174356.11e-180DNA repair protein RAD16
TrEMBLA0A3B6C5I20.0A0A3B6C5I2_WHEAT; Uncharacterized protein
TrEMBLA0A446M6H60.0A0A446M6H6_TRITD; Uncharacterized protein
STRINGTraes_2BS_9C5982D89.10.0(Triticum aestivum)
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]