PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BS_8AD8CD022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 108aa MW: 12197.5 Da PI: 11.8762 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.2 | 8e-15 | 4 | 80 | 18 | 93 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 +p +f ++hg+ ++++++l++ +g+sW v+l+++ +s++ l+ GW +F+ +ngL +gD++ F+ g+ s +e + Traes_2BS_8AD8CD022.1 4 VPVEFQNAHGYAERSKVELRM---RGKSWFVNLKHSPRSRGrprASLRYGWHQFCVDNGLGVGDTCFFRALGEgSAGEXL 80 79999999*999888766664...67*******994444444669************************88876777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.393 | 1 | 84 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.6E-20 | 2 | 74 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-14 | 3 | 74 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.3E-12 | 4 | 79 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.41E-12 | 4 | 75 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MQNVPVEFQN AHGYAERSKV ELRMRGKSWF VNLKHSPRSR GRPRASLRYG WHQFCVDNGL 60 GVGDTCFFRA LGEGSAGEXL PSSRRRQRRR GPPSQGGGEE ARRQLPGL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 84 | 89 | RRQRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376998 | 7e-91 | AK376998.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3145A16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148430.1 | 1e-49 | B3 domain-containing protein Os03g0212300-like | ||||
Swissprot | A3A463 | 6e-31 | Y2042_ORYSJ; B3 domain-containing protein LOC_Os02g10420 | ||||
Swissprot | Q10Q26 | 1e-29 | Y3123_ORYSJ; B3 domain-containing protein Os03g0212300 | ||||
TrEMBL | A0A453IN10 | 3e-51 | A0A453IN10_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2BS_8AD8CD022.1 | 3e-72 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4748 | 32 | 64 |
Publications ? help Back to Top | |||
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