PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_705DDDDC8.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 365aa    MW: 37090.5 Da    PI: 6.7055
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_705DDDDC8.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00095156178123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            y+C  Cgk+F++   L  H  +H
  Traes_2BS_705DDDDC8.2 156 YECRTCGKCFPSFQALGGHRTSH 178
                            99*********999998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.0E-10155180IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.845156183IPR007087Zinc finger, C2H2
SMARTSM003550.11156178IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.21E-8156178No hitNo description
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
SuperFamilySSF576674.21E-8256283No hitNo description
PfamPF139121.0E-12260284IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076261288IPR007087Zinc finger, C2H2
SMARTSM003550.026261283IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280263283IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGEEAGDGYG HGTPPDALTA IVVKGKRSKR RRVHAAAVIA AAEAEVTAVT TASAAGEVAS  60
SSSSVADGGG WRSGADEAAS GCVTEEEEDM ALCLMLLARG GGGQGSRAGA SSASSSVVVR  120
DDVAESTAGV MAVATAREGK FRSRRPADGG EGEFVYECRT CGKCFPSFQA LGGHRTSHKK  180
PRLPLPPTTA ATASSSEEKK LPADEKTPPP PSSPSPAAAV DRTVLAIPVP ATPPKQEGAA  240
TATVVSSSKQ QQQQQGQGRV HECSICGAEF GSGQALGGHM RRHRPLLPAS ASVSSTDGVA  300
AVLVIRKEKS PLELDLNMPA PCDDAAATEA TSPSPFSFSV KERPSAPAAL LPFPAPASAL  360
VDCHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12832KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086452e-38AK108645.1 Oryza sativa Japonica Group cDNA clone:002-148-B03, full insert sequence.
GenBankAL6066032e-38AL606603.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050N09, complete sequence.
GenBankAL6066542e-38AL606654.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0028M18, complete sequence.
GenBankAP0149602e-38AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126122e-38CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCT8336972e-38CT833697.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN043G17, full insert sequence.
GenBankCU4057772e-38CU405777.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C113D03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150862.11e-168zinc finger protein ZAT5-like
TrEMBLA0A3B6BX140.0A0A3B6BX14_WHEAT; Uncharacterized protein
STRINGTraes_2BS_705DDDDC8.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.16e-31C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]