PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BS_667E8520D.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 205aa MW: 23701.9 Da PI: 7.7346 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.7 | 4.3e-13 | 119 | 191 | 12 | 90 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ++ l + +f eh + + ++l de+ ++++v + r +s++ l +GW+eF+ +n+L egD +vF+l++r f Traes_2BS_667E8520D.2 119 SLTSLHILAQFSMEHLPD--HRMRMVLVDEEEEEFKVLY--RPHSSS--LITGWSEFAVDNELVEGDCLVFQLIKRALF 191 344467888999899433..5578***************..999988..556********************9986544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.31E-16 | 105 | 192 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-15 | 106 | 192 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.95E-16 | 110 | 188 | No hit | No description |
SMART | SM01019 | 3.4E-11 | 112 | 200 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-10 | 118 | 189 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
NSYEEQRRRQ VEENKRKLEE LRLHHLSAAV REAAVKPRLK RKAPKPRDAA DDAPPRRSGR 60 IATLPEQPDY RDNVRLGTGK PRQQKEVKPD HAYAIAKAEE LQDELGSDYP TFVKPMPQSL 120 TSLHILAQFS MEHLPDHRMR MVLVDEEEEE FKVLYRPHSS SLITGWSEFA VDNELVEGDC 180 LVFQLIKRAL FKHVSRCVEG TEKAQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374346 | 0.0 | AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158478.1 | 1e-132 | B3 domain-containing protein Os06g0194400-like | ||||
Swissprot | Q69V36 | 2e-58 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A446M0M3 | 1e-137 | A0A446M0M3_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BS_667E8520D.2 | 1e-150 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 3e-24 | B3 family protein |
Publications ? help Back to Top | |||
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