PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BS_659F9ABB9.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 302aa MW: 33000.6 Da PI: 4.5722 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.8 | 2.9e-11 | 226 | 266 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ +L+ l+P+ +K++ +++Le+AveY+k +q Traes_2BS_659F9ABB9.1 226 RKRRERINERLKTLQNLVPNG-----TKVDISTMLEEAVEYVKFMQ 266 9******************97.....8****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.205 | 216 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-14 | 217 | 281 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-13 | 221 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-12 | 222 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.54E-12 | 225 | 270 | No hit | No description |
Pfam | PF00010 | 1.1E-8 | 226 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MESSYSSAMP METDMMSQFL GGDHHCFAYE QQDESMEAMA AMFLPGLDTD SNSSSSCLNY 60 DVSPQCWPQP QPQPGHSSSV TSFLDPAHGY ESFEFPVMDP FSHAEFQSHC TDIPYLIGGS 120 EDLSPLDSNC APAGGEEAAN DHTPVTNKRK SRAATTASKK AKKAAKKDLT SNDIEGDDTY 180 VIDPQSSSSC TSEDGDLDGN AKSGSKKTGT RASRGAATDP QSLYARKRRE RINERLKTLQ 240 NLVPNGTKVD ISTMLEEAVE YVKFMQLQIK LLSSDDMWMY APLAYNGINV SSLEMHIAAL 300 QK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153858.1 | 0.0 | transcription factor bHLH69-like | ||||
TrEMBL | A0A446M3E4 | 0.0 | A0A446M3E4_TRITD; Uncharacterized protein | ||||
TrEMBL | W5BKQ7 | 0.0 | W5BKQ7_WHEAT; RSL4-2BS | ||||
STRING | Traes_2BS_659F9ABB9.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12496 | 29 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27740.1 | 1e-50 | root hair defective 6-like 4 |
Publications ? help Back to Top | |||
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