PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_659F9ABB9.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 302aa    MW: 33000.6 Da    PI: 4.5722
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_659F9ABB9.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.82.9e-112262661055
                            HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            r+RR+riN+++ +L+ l+P+      +K++ +++Le+AveY+k +q
  Traes_2BS_659F9ABB9.1 226 RKRRERINERLKTLQNLVPNG-----TKVDISTMLEEAVEYVKFMQ 266
                            9******************97.....8****************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.205216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-14217281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-13221276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-12222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-12225270No hitNo description
PfamPF000101.1E-8226266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MESSYSSAMP METDMMSQFL GGDHHCFAYE QQDESMEAMA AMFLPGLDTD SNSSSSCLNY  60
DVSPQCWPQP QPQPGHSSSV TSFLDPAHGY ESFEFPVMDP FSHAEFQSHC TDIPYLIGGS  120
EDLSPLDSNC APAGGEEAAN DHTPVTNKRK SRAATTASKK AKKAAKKDLT SNDIEGDDTY  180
VIDPQSSSSC TSEDGDLDGN AKSGSKKTGT RASRGAATDP QSLYARKRRE RINERLKTLQ  240
NLVPNGTKVD ISTMLEEAVE YVKFMQLQIK LLSSDDMWMY APLAYNGINV SSLEMHIAAL  300
QK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153858.10.0transcription factor bHLH69-like
TrEMBLA0A446M3E40.0A0A446M3E4_TRITD; Uncharacterized protein
TrEMBLW5BKQ70.0W5BKQ7_WHEAT; RSL4-2BS
STRINGTraes_2BS_659F9ABB9.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124962935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.11e-50root hair defective 6-like 4
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]