PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BS_62B9BD157.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 699aa MW: 81140.6 Da PI: 8.4628 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.9 | 4.7e-25 | 31 | 121 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 Yn+YA+ GFsvr + +++ k ++e++ r+f+Cskeg+r e+ + t+++r++ra tr+gCka+l+++ + +g+w v+k++ HnH Traes_2BS_62B9BD157.1 31 HYNRYARAKGFSVRLDDKEYVKGTREVKARRFCCSKEGHRLEKYFQaTDQKREPRALTRCGCKAMLEIQHDAgRGQWFVKKFVDVHNH 118 6***************************************999877689999********************9*************** PP FAR1 88 ela 90 +la Traes_2BS_62B9BD157.1 119 PLA 121 *96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.2E-22 | 31 | 121 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.4E-34 | 243 | 337 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.433 | 524 | 563 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 699 aa Download sequence Send to blast |
MDGHTASLEE IEEYHMMVSQ MFASEKQGYE HYNRYARAKG FSVRLDDKEY VKGTREVKAR 60 RFCCSKEGHR LEKYFQATDQ KREPRALTRC GCKAMLEIQH DAGRGQWFVK KFVDVHNHPL 120 ADPDQSAFLR SHHRMNDAHK ADAVEYGLGG LRTFQIMNVA EKQHGGYPHV GYISRDLYNF 180 FARYKKKRIL GRDADFVLNH MRVQEERDAE FFFKYTTDDE GHLRNLFWAD SQSQIDYDAF 240 GDVVVFDSTY RVNRYNLPFV AFVGLNHHRS TVVFGIGVVS DETHKSYEWL LQTFVEAMGH 300 KEPISVITDG DSAMRKAIRK ILPRTDHRLC SWHIEQNMIR HLHNPMLDDF RKLIYCRMGV 360 YQFEKSWAEF KANYEIEEEN EWMSRMYKLR KKWAAAYTKG RYFLGMQSNQ RSESLNSRLH 420 NHLDRKMSLV DVVEHTEHCI SRMRRNEAEL DAICSHSVPF TRIDACLLEI NAARIYTPKF 480 FKMVRDCIRR SCALVIQEQT TVNDLVRYEV VLKDGAEGGS RRLFSVECSF NGSLTNGAFC 540 PCRKMECEAI PCAHIFAVLV FVRAATIPPC CVSKRWTMEA KAAFVSVRNA NTHVWSEEMS 600 RYRELRNIAS IALFKVSKSG ERSPEVKDYL QSIIDGPIEN DDNTEETTFG PIPSHYSAAS 660 NASADRVLDP KIVDTKGAPC KKRMKLFMTF FGLFAMIIR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185324.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453DAE7 | 0.0 | A0A453DAE7_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2BS_62B9BD157.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-94 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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