PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BS_5DAE613CE.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 669aa MW: 71430.9 Da PI: 6.7518 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.8 | 3.8e-08 | 276 | 298 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f+r G C+ Gd+C F+Hg Traes_2BS_5DAE613CE.1 276 VPCPNFRRPGGCPSGDNCEFSHG 298 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 2.05E-13 | 61 | 145 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 9.7E-10 | 62 | 133 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.5E-15 | 64 | 148 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 19.253 | 65 | 141 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 4.2 | 65 | 94 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 2.30E-13 | 67 | 148 | No hit | No description |
PROSITE profile | PS50088 | 13.277 | 101 | 136 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 8.5E-5 | 101 | 133 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 7.8E-5 | 102 | 117 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 7.8E-5 | 120 | 134 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50103 | 14.126 | 272 | 300 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.6E-4 | 272 | 299 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 273 | 301 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-6 | 276 | 299 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-6 | 276 | 298 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.1E-4 | 305 | 337 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 21 | 308 | 331 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 669 aa Download sequence Send to blast |
MGDLPDLDRA QAAGAGRRDR LAALLELAAA DDVDGMRAAL EGAGEEAAEL ADDVGLWYGR 60 SKAYEPRTPL MVAATYGSAR VVSLLLGRAG WVDVARRPGG DGFTPLHCAA SGGSCNAVQV 120 VKMLLDAGAD PATVDSTGRA PADVVRAHPA SADALGDLEI LLGRRRALAV ATSAASGASS 180 PPLSSSPDDE GNRSPSSRSS SLSPITVDRA KKEYPVDPTL PDIKSSVYAS DEFRMFAFKV 240 RPCSRAYSHD WTECPFVHPG ENARRRDPRK HPYTAVPCPN FRRPGGCPSG DNCEFSHGVF 300 ESWLHPTQYR TRLCKEGAAC ARRICFFAHD EDELRHVPHN SGAGLLSPRA TSSIDMTAAA 360 ALGLLPGSPR HFVPPPGSPS AVNNGGAASA HWLQGSRLRS SFNAGDATVE DLGLLLDWES 420 QYLGALCLPP SSRPQPRLST GLSIRPTAIA PTSLEDMYAS EMAMSPRFTN DQGHSAYSPA 480 HKSAILNKLH QQKGLLSPVN TNRMYSPRAL DPAALVHSPI SGMSPRSPRL MEPTSPMSAR 540 FGATVTQREM YEQFSSLNKH QLPSVGSPRN SNAASWGNVG SSPMGKVDWG VDGEELDRLR 600 CPDQPGFAEK EPDAPWGRSL NSNRGEMQLG MSGGMASGSA NRPDWNNQAD LLDQMAIGAW 660 LEQLQTDQK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4gmr_A | 2e-13 | 11 | 148 | 10 | 146 | OR266 DE NOVO PROTEIN |
4gmr_B | 2e-13 | 11 | 148 | 10 | 146 | OR266 DE NOVO PROTEIN |
4hb5_A | 2e-13 | 11 | 148 | 10 | 146 | Engineered Protein |
4hb5_B | 2e-13 | 11 | 148 | 10 | 146 | Engineered Protein |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357194 | 0.0 | AK357194.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1047P21. | |||
GenBank | AK363392 | 0.0 | AK363392.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2015B03. | |||
GenBank | AK364612 | 0.0 | AK364612.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2026O22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185855.1 | 0.0 | zinc finger CCCH domain-containing protein 50-like | ||||
Swissprot | Q84SL2 | 0.0 | C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50 | ||||
TrEMBL | A0A3B6C3K5 | 0.0 | A0A3B6C3K5_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BS_5DAE613CE.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP823 | 37 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 1e-137 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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