PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_5DAE613CE.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 669aa    MW: 71430.9 Da    PI: 6.7518
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_5DAE613CE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.8e-08276298426
                            ---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                            ++C++f+r G C+ Gd+C F+Hg
  Traes_2BS_5DAE613CE.1 276 VPCPNFRRPGGCPSGDNCEFSHG 298
                            79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.05E-1361145IPR020683Ankyrin repeat-containing domain
PfamPF127969.7E-1062133IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.5E-1564148IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.25365141IPR020683Ankyrin repeat-containing domain
SMARTSM002484.26594IPR002110Ankyrin repeat
CDDcd002042.30E-1367148No hitNo description
PROSITE profilePS5008813.277101136IPR002110Ankyrin repeat
SMARTSM002488.5E-5101133IPR002110Ankyrin repeat
PRINTSPR014157.8E-5102117IPR002110Ankyrin repeat
PRINTSPR014157.8E-5120134IPR002110Ankyrin repeat
PROSITE profilePS5010314.126272300IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-4272299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5273301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-6276299IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6276298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-4305337IPR000571Zinc finger, CCCH-type
SMARTSM0035621308331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MGDLPDLDRA QAAGAGRRDR LAALLELAAA DDVDGMRAAL EGAGEEAAEL ADDVGLWYGR  60
SKAYEPRTPL MVAATYGSAR VVSLLLGRAG WVDVARRPGG DGFTPLHCAA SGGSCNAVQV  120
VKMLLDAGAD PATVDSTGRA PADVVRAHPA SADALGDLEI LLGRRRALAV ATSAASGASS  180
PPLSSSPDDE GNRSPSSRSS SLSPITVDRA KKEYPVDPTL PDIKSSVYAS DEFRMFAFKV  240
RPCSRAYSHD WTECPFVHPG ENARRRDPRK HPYTAVPCPN FRRPGGCPSG DNCEFSHGVF  300
ESWLHPTQYR TRLCKEGAAC ARRICFFAHD EDELRHVPHN SGAGLLSPRA TSSIDMTAAA  360
ALGLLPGSPR HFVPPPGSPS AVNNGGAASA HWLQGSRLRS SFNAGDATVE DLGLLLDWES  420
QYLGALCLPP SSRPQPRLST GLSIRPTAIA PTSLEDMYAS EMAMSPRFTN DQGHSAYSPA  480
HKSAILNKLH QQKGLLSPVN TNRMYSPRAL DPAALVHSPI SGMSPRSPRL MEPTSPMSAR  540
FGATVTQREM YEQFSSLNKH QLPSVGSPRN SNAASWGNVG SSPMGKVDWG VDGEELDRLR  600
CPDQPGFAEK EPDAPWGRSL NSNRGEMQLG MSGGMASGSA NRPDWNNQAD LLDQMAIGAW  660
LEQLQTDQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gmr_A2e-131114810146OR266 DE NOVO PROTEIN
4gmr_B2e-131114810146OR266 DE NOVO PROTEIN
4hb5_A2e-131114810146Engineered Protein
4hb5_B2e-131114810146Engineered Protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3571940.0AK357194.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1047P21.
GenBankAK3633920.0AK363392.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2015B03.
GenBankAK3646120.0AK364612.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2026O22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185855.10.0zinc finger CCCH domain-containing protein 50-like
SwissprotQ84SL20.0C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLA0A3B6C3K50.0A0A3B6C3K5_WHEAT; Uncharacterized protein
STRINGTraes_2BS_5DAE613CE.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-137CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]