PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BS_5B00A8C50.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 950aa MW: 104502 Da PI: 6.7145 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.5 | 6e-19 | 363 | 462 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+kvl+ sd+++ grlvlpk +ae++ ++++e++ lt++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++ Traes_2BS_5B00A8C50.1 363 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSR 449 99**************************555567778***************9989999999***9.********************8 PP -SSSEE..EEEEE- CS B3 85 dgrsefelvvkvfr 98 ++ +++lv+++++ Traes_2BS_5B00A8C50.1 450 IE-PGGKLVMGFRK 462 87.77777877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-31 | 355 | 472 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.01E-21 | 360 | 463 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.30E-24 | 361 | 462 | No hit | No description |
SMART | SM01019 | 4.0E-22 | 363 | 463 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.6E-16 | 363 | 462 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.547 | 363 | 464 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.811 | 624 | 674 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 8.2E-12 | 629 | 671 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 950 aa Download sequence Send to blast |
MAGMGAAAAA RCMNAACGAP APGAGDWRKG WPLRSGGFAV LCDKCGLAFE QFVFCDIFHQ 60 KESGWRDCSF CGKRLHCGCV ASKNSFDLLD SGGVQCANCM KNPGAHPVSC QVAPKLFLPP 120 QNNQRLFGKS DELLPGRPLE SPSLMIDSRN DDIAIIAKSN HPFMVKNLEI GQSSNNLRQK 180 EIENGARQIK WEQPTLSIGD MGRMPFLIRP QSALESPQSQ CTRRDDNRDP TADSTTSESI 240 SEAGLSMSLG IANNGNKMEA TSTMERPMVS PTTPFSEGRE LATTLSPFQH AQRARHFLTR 300 PSRVAEGAAF DPMRDGFPHL RVARPPAEGR GRNQLLPRYW PRITDQELQQ ISGDSNSTIV 360 PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGRPL TIQDAKGKEW HFQFRFWPNN 420 NSRMYVLEGV TPCIQSLQLQ AGDTVTFSRI EPGGKLVMGF RKATNTVSLP DSQISAIATG 480 SLLGDSFFSN TNENLSIVSG YSGFLQSMKG AADLQPSSLF DHHANSADGE VSWLKADRFG 540 GRPDEGSFQF LHKKSRNIGS KSRRLLMDNE EALELKLSWE EAQELLRPAP SAKPTVVMIE 600 DYEFEEYDEP PVFAKRSIFT SRSTGEQDQW IQCDDCSKWR RLPLNVIIAS KWRCADNTWD 660 PKSCSCSAPE ELAHKELQSI LQQYEEIRRR KSNYFLKQSI PEMDASSLDA LATAAVFGEV 720 GNQGAASVAT TTKHPRHRPG CTCIVCIQPP SGKGPKHNPA CTCNVCMTVR RRFKTLMMRK 780 KQRQSEREEA EASKRISWVG RDEPEGSNLS RSPQTVDTMR DGDVIMFDKA DASKGHIDLN 840 FHPASREEEQ QHGGQPRVSM VSLLEVANRP LESYMKQNGL VSLAAEQGSS SGTATVPSQP 900 APMESEERPS DEGRAVPVEQ EREPTDNMAV DEAAGENQGH AASASDIAAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 1e-66 | 341 | 465 | 2 | 126 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 769 | 780 | RRRFKTLMMRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK358679 | 0.0 | AK358679.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1081G10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158213.1 | 0.0 | B3 domain-containing protein Os07g0679700 isoform X1 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A3B6C2S5 | 0.0 | A0A3B6C2S5_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BS_5B00A8C50.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6519 | 37 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-177 | HSI2-like 1 |
Publications ? help Back to Top | |||
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