PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BS_59D534318.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 772aa MW: 88086 Da PI: 7.7137 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 43.2 | 5.6e-14 | 105 | 141 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C Cg + Tp++Rrgpdg++tLCnaCG+ yrk ++ Traes_2BS_59D534318.1 105 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRKGKM 141 5667777777************************876 PP | |||||||
2 | FAR1 | 83.6 | 3.3e-26 | 175 | 262 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA +vGFsvrks+s+ks++n ++ rtfvCs+eg+++++k+ +++++r tr+gC a+l +k + + k++vt+++ eHnH+ Traes_2BS_59D534318.1 175 EFYNKYAGHVGFSVRKSTSHKSSENI-TKVRTFVCSREGYNRDKKSL--EAKKPRLDTRIGCPARLIIKVTPECKYRVTDFKAEHNHQ 259 6*********************6666.899*************9988..99************************************* PP FAR1 89 lap 91 lap Traes_2BS_59D534318.1 260 LAP 262 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.33E-10 | 100 | 151 | No hit | No description |
SMART | SM00401 | 6.5E-6 | 101 | 154 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 4.2E-11 | 104 | 143 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.03E-7 | 104 | 142 | No hit | No description |
Pfam | PF00320 | 1.4E-11 | 105 | 140 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF03101 | 1.8E-23 | 175 | 262 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.2E-26 | 385 | 479 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 7.9E-7 | 661 | 699 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 9.977 | 664 | 700 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.4E-6 | 675 | 702 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 772 aa Download sequence Send to blast |
MRPHEATYRA AASDPSTPSP IPTPLICYPS SDSHKPRGFP KFVRNFLPNH SPVLPKGGDA 60 MMHMLVASDG GGGEMHPYAA VPAEQELELH RDNAADDSLD GHVRCLRCGI SGNATPHMRR 120 GPDGPRTLCN ACGIAYRKGK MRRMIEAEPP IDEASLAKLV PEVDMEFESE EKAYEFYNKY 180 AGHVGFSVRK STSHKSSENI TKVRTFVCSR EGYNRDKKSL EAKKPRLDTR IGCPARLIIK 240 VTPECKYRVT DFKAEHNHQL APPSTMHMLR SQRILTELQS GEAELSDDSV VTPTTKATGD 300 LVVRQVGFLR SISVLPADYN NYLRSKRTKA MQPGDGGAIL KYLQTMQMDN PSFFYTMQID 360 EDDKLTNFFW ADPKSREDFT YFNDVLCLDT TYKINGYGRP LALFLGVNHH RQTIIFGAAM 420 LYDESFESYK WLFESFKIAM HGKEPAVALI DQSIQLSSAM AAAWPNTAQR VCAWHVYQNS 480 VKHLNQVFQG SKTFAKDFSK CVFGYEEEEE FVFAWRTMLE KYDLRHNEWL SKLFDERERW 540 ALAYDRHIFC ADIISSLQAE SFSSILKKFL SPQLDLLSFF KHYERAVDEH RYAELQADFQ 600 ASQSYPRIPP AKMLKQTSHT YTPVVFEIFR KEFELFMDSV LFTCGEAGTT SDYKVAPSEK 660 PKEHFVRFNS SDNSCMCTCK KFEFMGIPCC HMLKVLDYRN IKELPHIYLL KRWRRTAKST 720 DEDSQGHAAN DNRSSLNVSV PSANHHGLQS INARIQDTSL SNMHENPFHR SS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK358341 | 0.0 | AK358341.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1074F13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175511.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453B3E0 | 0.0 | A0A453B3E0_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2BS_59D534318.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-117 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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