PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_494F02775.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 200aa    MW: 21193.1 Da    PI: 9.1303
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_494F02775.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-055274123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ Cgk F+++  L  H  +H
  Traes_2BS_494F02775.1 52 FRCSVCGKAFPSHQALGGHKASH 74
                           89*************99998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.8E-125176IPR007087Zinc finger, C2H2
SMARTSM003550.00685274IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7625279IPR007087Zinc finger, C2H2
SuperFamilySSF576672.89E-852127No hitNo description
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
SMARTSM003550.65105127IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411105127IPR007087Zinc finger, C2H2
PfamPF139126.5E-11105128IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAMMKMTHDD YVHLCLMALA SVATGGDQAQ AAKGQWLQTV TAAAPAASEL RFRCSVCGKA  60
FPSHQALGGH KASHRKRAAL VLPLQSVSPA EETVASSTSS GVGGHRCSVC HRSFATGQAL  120
GGHKRCHYWD GLSVSLTASA SRSGSGSSVR DFDLNLTPVP EKAAGGMRRW GEEEEVQSPL  180
PLKKRRLSSP SLELNLILLD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269|PubMed:25071223}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269|PubMed:25071223}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182764.11e-128zinc finger protein ZAT6-like
SwissprotQ75KE55e-53ZFP36_ORYSJ; Zinc finger protein 36
TrEMBLA0A3B6BZH81e-144A0A3B6BZH8_WHEAT; Uncharacterized protein
STRINGTraes_2BS_494F02775.11e-144(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34123273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.13e-31zinc finger of Arabidopsis thaliana 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Zhang H, et al.
    A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice.
    J. Exp. Bot., 2014. 65(20): p. 5795-809
    [PMID:25071223]
  5. Li W, et al.
    A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.
    Cell, 2017. 170(1): p. 114-126.e15
    [PMID:28666113]