PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2BS_4600D4B54.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 570aa MW: 64414.1 Da PI: 6.4646

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BS_4600D4B54.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	423.9	1.3e-129	201	569	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 +elL++cAea+s++ +e+ +l+++ + ++s +g+p+qRl ay++e+L ar +s++++y+al+++e + s+e l+++k++++++P Traes_2BS_4600D4B54.2 201 KELLTKCAEALSEDRTEEFLKLVQEARGTVSINGEPIQRLGAYLLEGLVARHGNSGTNIYRALKCREPE---SKELLSYMKILYNICP 285 689***************************************************************9...9*********** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvp 175 ++kf++++aN aI ea+ +e+ +HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+ + e le +g+ L+++ +e+++p Traes_2BS_4600D4B54.2 286 YFKFGYMAANGAIAEALRSEDNIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGEGLEIVGNMLTSMSKEFNIP 373 *********************************************************999999***************** PP GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263 +ef++l ++++ e+L+++pgEa+aVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++Fl rfle+++y Traes_2BS_4600D4B54.2 374 LEFTPL-PVYATQVTKEMLKIRPGEAVAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFLETMDY 460 *6.77788999********************************************************************* PP GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351 ysa+f+s++a+lpr+s+eri+vE+++l+++ivn++aceg++r+erhe l+kW++rl++aGFkp+pls+++++ +k ll+ ++ d y++ Traes_2BS_4600D4B54.2 461 YSAMFESIDANLPRDSKERISVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLSMAGFKPYPLSSYVNSVIKKLLACYS-DKYTL 547 ***************************************************************************999.55* PP GRAS 352 eeesgslvlgWkdrpLvsvSaW 373 ee++g+++lgWk+r+L+s+SaW Traes_2BS_4600D4B54.2 548 EEKDGAMLLGWKSRKLISASAW 569 ********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.123	174	551	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.5E-127	201	569	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
MDLHQLFKYR LTGANVFWEI PTENNLANSS WQTSPLKLEF SNSPYTPLST QLECDNLSAL 60 SNTPDNQSST ETISAQPISP LEADSSYIKA GSIRENIQVR PDPLYATSRH NMQQTLRDIE 120 NVLMAPDADD ATTSTKHEFE DTKPAQLMRQ RSRTWSHESR QPLPGVVRPH FASGGYPTAS 180 YEFRPEKRQR ELRDDRQHIV KELLTKCAEA LSEDRTEEFL KLVQEARGTV SINGEPIQRL 240 GAYLLEGLVA RHGNSGTNIY RALKCREPES KELLSYMKIL YNICPYFKFG YMAANGAIAE 300 ALRSEDNIHI IDFQIAQGTQ WITLIQALAA RPGGPPHVRI TGIDDPVSEY ARGEGLEIVG 360 NMLTSMSKEF NIPLEFTPLP VYATQVTKEM LKIRPGEAVA VNFTLQLHHT PDESVDVNNP 420 RDGLLRMVKG LSPKVTTLVE QESHTNTTPF LMRFLETMDY YSAMFESIDA NLPRDSKERI 480 SVEQHCLAKD IVNIIACEGK DRVERHELLG KWKSRLSMAG FKPYPLSSYV NSVIKKLLAC 540 YSDKYTLEEK DGAMLLGWKS RKLISASAWH

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

MDLHQLFKYR LTGANVFWEI PTENNLANSS WQTSPLKLEF SNSPYTPLST QLECDNLSAL  60
SNTPDNQSST ETISAQPISP LEADSSYIKA GSIRENIQVR PDPLYATSRH NMQQTLRDIE  120
NVLMAPDADD ATTSTKHEFE DTKPAQLMRQ RSRTWSHESR QPLPGVVRPH FASGGYPTAS  180
YEFRPEKRQR ELRDDRQHIV KELLTKCAEA LSEDRTEEFL KLVQEARGTV SINGEPIQRL  240
GAYLLEGLVA RHGNSGTNIY RALKCREPES KELLSYMKIL YNICPYFKFG YMAANGAIAE  300
ALRSEDNIHI IDFQIAQGTQ WITLIQALAA RPGGPPHVRI TGIDDPVSEY ARGEGLEIVG  360
NMLTSMSKEF NIPLEFTPLP VYATQVTKEM LKIRPGEAVA VNFTLQLHHT PDESVDVNNP  420
RDGLLRMVKG LSPKVTTLVE QESHTNTTPF LMRFLETMDY YSAMFESIDA NLPRDSKERI  480
SVEQHCLAKD IVNIIACEGK DRVERHELLG KWKSRLSMAG FKPYPLSSYV NSVIKKLLAC  540
YSDKYTLEEK DGAMLLGWKS RKLISASAWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-72	184	569	3	378	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK359701	0.0	AK359701.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1101A23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191335.1	0.0	chitin-inducible gibberellin-responsive protein 1
Swissprot	Q69VG1	0.0	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A3B6C470	0.0	A0A3B6C470_WHEAT; Uncharacterized protein
TrEMBL	A0A446M5D8	0.0	A0A446M5D8_TRITD; Uncharacterized protein
STRING	Traes_2BS_4600D4B54.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10631	36	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	0.0	GRAS family protein

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]