PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_3B6ABF5E6.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 387aa    MW: 43289.7 Da    PI: 7.1385
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_3B6ABF5E6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.16.1e-52131411128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                            l+pGfrFhPtdeelv++yLkkk+++k++++ e i+++diyk++PwdLpk + +++e+ewyf+++rd+ky+++ r+nr+t++g+Wkatg
  Traes_2BS_3B6ABF5E6.1  13 LMPGFRFHPTDEELVSFYLKKKIQQKPISI-ELIRQLDIYKFDPWDLPKlASTGGETEWYFYCPRDRKYRNSARPNRVTAAGFWKATG 99 
                            689***************************.89***************525556788******************************* PP

                    NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            +d++++s+ +++ vglkk+Lvfykgra +g ktdW+mhe+r+
  Traes_2BS_3B6ABF5E6.1 100 TDRPIYSSeDTRCVGLKKSLVFYKGRAARGIKTDWMMHEFRF 141
                            ******9866777***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-5612173IPR003441NAC domain
PROSITE profilePS5100556.88413173IPR003441NAC domain
PfamPF023653.1E-2515140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MESRDDVKSD EILMPGFRFH PTDEELVSFY LKKKIQQKPI SIELIRQLDI YKFDPWDLPK  60
LASTGGETEW YFYCPRDRKY RNSARPNRVT AAGFWKATGT DRPIYSSEDT RCVGLKKSLV  120
FYKGRAARGI KTDWMMHEFR FPSLADTSLP KSRPIDKNIP LNDSWTICRI FKKTSSMAAQ  180
RALSHTWGAP LPGATEQDLF SALQPVQALH FASESSSSSL QVAAALPSNQ FNGNYGFQGQ  240
HQQFLKPSNT REDGSSCKVI SFNCGPSLQV LKGPIVLPFQ TQPPSQKPVH VAPPLFFDTQ  300
SGQPEQITGF ATGSSADVNA DMSCRDQESA TTKHGNTFSM NSEREDVGLG RLNFPFDLGA  360
GSSDDWECNI PWESFLSPTV PAEITQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4911763171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190502.10.0protein FEZ-like
SwissprotQ9ZVH06e-96FEZ_ARATH; Protein FEZ
TrEMBLA0A3B6BYP40.0A0A3B6BYP4_WHEAT; Uncharacterized protein
STRINGTraes_2BS_3B6ABF5E6.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33663882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-95NAC family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]