PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BS_3B6ABF5E6.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 387aa MW: 43289.7 Da PI: 7.1385 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.1 | 6.1e-52 | 13 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 l+pGfrFhPtdeelv++yLkkk+++k++++ e i+++diyk++PwdLpk + +++e+ewyf+++rd+ky+++ r+nr+t++g+Wkatg Traes_2BS_3B6ABF5E6.1 13 LMPGFRFHPTDEELVSFYLKKKIQQKPISI-ELIRQLDIYKFDPWDLPKlASTGGETEWYFYCPRDRKYRNSARPNRVTAAGFWKATG 99 689***************************.89***************525556788******************************* PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +d++++s+ +++ vglkk+Lvfykgra +g ktdW+mhe+r+ Traes_2BS_3B6ABF5E6.1 100 TDRPIYSSeDTRCVGLKKSLVFYKGRAARGIKTDWMMHEFRF 141 ******9866777***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-56 | 12 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.884 | 13 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-25 | 15 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MESRDDVKSD EILMPGFRFH PTDEELVSFY LKKKIQQKPI SIELIRQLDI YKFDPWDLPK 60 LASTGGETEW YFYCPRDRKY RNSARPNRVT AAGFWKATGT DRPIYSSEDT RCVGLKKSLV 120 FYKGRAARGI KTDWMMHEFR FPSLADTSLP KSRPIDKNIP LNDSWTICRI FKKTSSMAAQ 180 RALSHTWGAP LPGATEQDLF SALQPVQALH FASESSSSSL QVAAALPSNQ FNGNYGFQGQ 240 HQQFLKPSNT REDGSSCKVI SFNCGPSLQV LKGPIVLPFQ TQPPSQKPVH VAPPLFFDTQ 300 SGQPEQITGF ATGSSADVNA DMSCRDQESA TTKHGNTFSM NSEREDVGLG RLNFPFDLGA 360 GSSDDWECNI PWESFLSPTV PAEITQY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-49 | 1 | 176 | 3 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190502.1 | 0.0 | protein FEZ-like | ||||
Swissprot | Q9ZVH0 | 6e-96 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A3B6BYP4 | 0.0 | A0A3B6BYP4_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BS_3B6ABF5E6.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3366 | 38 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-95 | NAC family protein |
Publications ? help Back to Top | |||
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