PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_31F130A79.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 311aa    MW: 35094 Da    PI: 8.6245
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_31F130A79.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00066168192123
                            EEETTTTEEESSHHHHHHHHHH..T CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                            + C+ C+k ++  +++++H+++  H
  Traes_2BS_31F130A79.1 168 FFCSLCNKQYKLAYEFESHLSSydH 192
                            67*****************987666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004431.0E-1870116IPR000467G-patch domain
PROSITE profilePS5017418.08472118IPR000467G-patch domain
PfamPF015851.7E-1773114IPR000467G-patch domain
PROSITE patternPS000280170192IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MERPGHGGIG SGGGSKNPPP SGKKEAGDEE YGGGYDRLDE EVEFRLPRGH RPVENLDTEG  60
LEQASVDTRL ASSNVGFRLL QKMGWKSGKG LGKNEQGILE PIKAGIRDAK LGVGKQEEDD  120
FFTAEDNVQR KRLNVELEET EEHIKKREVT AEREQKIRSE VKEIQKTFFC SLCNKQYKLA  180
YEFESHLSSY DHNHRKRFKE MKEMQSGGSG NRDDRQKREQ QREEKELAKF AQLADAHRKQ  240
QKEKQEQPDI SGEQATSKNL PTPGNQDQRR TLKFGFSKMT PSKAPVGSMS KKPKIGTKVP  300
SVFGNDSDEE A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2488230.0AK248823.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf8m08, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166155.10.0G patch domain-containing protein 8
TrEMBLA0A3B6TYK10.0A0A3B6TYK1_WHEAT; Uncharacterized protein
STRINGTraes_2BS_31F130A79.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1017579
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]