PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_2530470BF.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 235aa    MW: 26194.8 Da    PI: 11.7637
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_2530470BF.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.13.9e-15129181557
                            SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
               Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                            t+ ++ q++ Le+++ + +yp+ e+ +e A+++gLt +qV++WF+ rR kek+
  Traes_2BS_2530470BF.1 129 TKKSPLQIQMLESFYSEVQYPKPEDVTEYAASVGLTYNQVRIWFKERRRKEKR 181
                            566899**********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.349122182IPR001356Homeobox domain
SuperFamilySSF466897.27E-15124189IPR009057Homeodomain-like
SMARTSM003896.3E-14124186IPR001356Homeobox domain
CDDcd000861.87E-13129183No hitNo description
Gene3DG3DSA:1.10.10.602.3E-15129191IPR009057Homeodomain-like
PfamPF000461.8E-12130181IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
GFCGRPSPLP PAASIPRAPI PGAGSPPLNP TPAGRHLPTT PSSTPRRLPI HGRRLEPHAR  60
RPSSTPRCPW RTPAAVPSPT PASHALRLHR RLRSSSSGLR CLRPVRGLWQ LGFQMMAKGF  120
LAKSDNAGTK KSPLQIQMLE SFYSEVQYPK PEDVTEYAAS VGLTYNQVRI WFKERRRKEK  180
RHMEAAEVHM ETQASARSNW PRCSSSRSSN SSQSPTQDTT GHHSYQDQSV LKKRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179RRRKEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3739810.0AK373981.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187489.11e-64homeobox-DDT domain protein RLT3-like
TrEMBLA0A453E7Y81e-89A0A453E7Y8_AEGTS; Uncharacterized protein
STRINGTraes_2BS_2530470BF.11e-170(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45563350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.15e-09Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]