PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_23097C174.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 895aa    MW: 97062.8 Da    PI: 5.2677
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_23097C174.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.7e-07101128225
                            -S---SGGGGTS....--TTTTT-SS-S CS
                zf-CCCH   2 ktelCrffartG....tCkyGdrCkFaH 25 
                            kt+lC+ff+r G     C++G+ C++aH
  Traes_2BS_23097C174.1 101 KTSLCSFFRRRGggpdGCNHGEACRYAH 128
                            9*************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-1096136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-597135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.95399131IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-499130IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-5101128IPR000571Zinc finger, CCCH-type
CDDcd005905.77E-4184249No hitNo description
SuperFamilySSF549282.61E-5187261IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3306.2E-6187258IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168746.145302895IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533356.35E-47304330IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533356.35E-47362465IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533356.35E-47537653IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1506.3E-63549653IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138479.9E-9593655IPR025714Methyltransferase domain
CDDcd024403.39E-7599653No hitNo description
Gene3DG3DSA:3.40.50.1506.3E-63776835IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533356.35E-47783839IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059586.7E-9787832IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300791823IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1506.3E-63870895IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533356.35E-47879895IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001510Biological ProcessRNA methylation
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    Send to blast
MEDTTMPPPP PQQQAPELTG EKRKREEEPP KAASGENPAM EDPTQPPAPQ QEAEPAGEKR  60
KREEESPEAA AGDAPPPASA APVADEAATA GGGGERHPMS KTSLCSFFRR RGGGPDGCNH  120
GEACRYAHTE EELRPRPDGT WDPTSDRAKK LRRVSEEEDG EEKARGRWGQ EEEVTFDEAS  180
LDKCLLGLSR HWLTDRLKAF LDDQGISYAV AKKKKGMTVG FVTFENVEQL KNAVEVLKEN  240
RSGGKQIKIA DANRRSHQKL HSEGPVSNNG AATENSGDTA APADGTSGPE AAAASKRTVR  300
DAVTPLAHMT YSDQLEHKKS SVAQLLKKLT RNAKKACPAD VTLPDWISNA KQIGGLSCKL  360
EGILESPVID GYRNKCEFSV GHSLAGKKTV GFMLGNFREG VTAVEEPVDC PNVSAMSCKY  420
AMIFQDFLQL SCLPAWNRVD NSGFWRQFTV REGRSPAQAV VAQDTQTQIS EVMIIIQVCS  480
TGVDEVLMKD EFAKLSKTLV QGAATCSPPL PLTTIVVQDH VGISNVAPAD CPLIPLLAPE  540
VDQSEEGAVD KTRIHDHISN LRFSLSPTAF FQVNTLAAER LYTLAGDWAN LNSDTLLFDV  600
CCGTGTIGLT LAHRVGMVVG IEMNESAVVD AQRNALINGI KNCRFVCGKA EDVMGSLLTE  660
YLGSPQQHIA ASESNSEVNG TGKKEDIVGG AEDNGKSMES LTEKNDTGEI NEDLDDGVSK  720
ELEGGHEQCN EAVRNQNSEE ASSLVNEESV DAKAADCSEH TKTREEGSSI SKNDVLAATA  780
CQFKNFVAIV DPPRAGLHPT VIKVLRTHPR IRRLVYISCN PDTLVANAIE LCTPSTEHRE  840
KNKGHRGWRN MSSAGLARQR TKSMPNSEPF VPKRAMAVDL FPHTSHCEMV MLFER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A2e-16554660265371Uncharacterized RNA methyltransferase SP_1029
5xj2_A2e-16554660265371Uncharacterized RNA methyltransferase SP_1029
5xj2_B2e-16554660265371Uncharacterized RNA methyltransferase SP_1029
5xj2_C2e-16554660265371Uncharacterized RNA methyltransferase SP_1029
5xj2_D2e-16554660265371Uncharacterized RNA methyltransferase SP_1029
5zq0_A2e-16554660266372Uncharacterized RNA methyltransferase SP_1029
5zq1_A2e-16554660265371Uncharacterized RNA methyltransferase SP_1029
5zq8_A2e-16554660265371Uncharacterized RNA methyltransferase SP_1029
5zq8_B2e-16554660265371Uncharacterized RNA methyltransferase SP_1029
5zth_A2e-16554660266372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174158.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A3B6BY370.0A0A3B6BY37_WHEAT; Uncharacterized protein
TrEMBLA0A446LSU80.0A0A446LSU8_TRITD; Uncharacterized protein
STRINGTraes_2BS_23097C174.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84933131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]