PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_2BS_23097C174.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 895aa MW: 97062.8 Da PI: 5.2677 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.1 | 2.7e-07 | 101 | 128 | 2 | 25 |
-S---SGGGGTS....--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartG....tCkyGdrCkFaH 25 kt+lC+ff+r G C++G+ C++aH Traes_2BS_23097C174.1 101 KTSLCSFFRRRGggpdGCNHGEACRYAH 128 9*************************** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-10 | 96 | 136 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-5 | 97 | 135 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.953 | 99 | 131 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.9E-4 | 99 | 130 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-5 | 101 | 128 | IPR000571 | Zinc finger, CCCH-type |
CDD | cd00590 | 5.77E-4 | 184 | 249 | No hit | No description |
SuperFamily | SSF54928 | 2.61E-5 | 187 | 261 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene3D | G3DSA:3.30.70.330 | 6.2E-6 | 187 | 258 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PROSITE profile | PS51687 | 46.145 | 302 | 895 | IPR010280 | (Uracil-5)-methyltransferase family |
SuperFamily | SSF53335 | 6.35E-47 | 304 | 330 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 6.35E-47 | 362 | 465 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 6.35E-47 | 537 | 653 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene3D | G3DSA:3.40.50.150 | 6.3E-63 | 549 | 653 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF13847 | 9.9E-9 | 593 | 655 | IPR025714 | Methyltransferase domain |
CDD | cd02440 | 3.39E-7 | 599 | 653 | No hit | No description |
Gene3D | G3DSA:3.40.50.150 | 6.3E-63 | 776 | 835 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 6.35E-47 | 783 | 839 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF05958 | 6.7E-9 | 787 | 832 | IPR010280 | (Uracil-5)-methyltransferase family |
PROSITE pattern | PS01230 | 0 | 791 | 823 | IPR030390 | RNA methyltransferase TrmA, active site |
Gene3D | G3DSA:3.40.50.150 | 6.3E-63 | 870 | 895 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 6.35E-47 | 879 | 895 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001510 | Biological Process | RNA methylation | ||||
GO:0006396 | Biological Process | RNA processing | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0008173 | Molecular Function | RNA methyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 895 aa Download sequence Send to blast |
MEDTTMPPPP PQQQAPELTG EKRKREEEPP KAASGENPAM EDPTQPPAPQ QEAEPAGEKR 60 KREEESPEAA AGDAPPPASA APVADEAATA GGGGERHPMS KTSLCSFFRR RGGGPDGCNH 120 GEACRYAHTE EELRPRPDGT WDPTSDRAKK LRRVSEEEDG EEKARGRWGQ EEEVTFDEAS 180 LDKCLLGLSR HWLTDRLKAF LDDQGISYAV AKKKKGMTVG FVTFENVEQL KNAVEVLKEN 240 RSGGKQIKIA DANRRSHQKL HSEGPVSNNG AATENSGDTA APADGTSGPE AAAASKRTVR 300 DAVTPLAHMT YSDQLEHKKS SVAQLLKKLT RNAKKACPAD VTLPDWISNA KQIGGLSCKL 360 EGILESPVID GYRNKCEFSV GHSLAGKKTV GFMLGNFREG VTAVEEPVDC PNVSAMSCKY 420 AMIFQDFLQL SCLPAWNRVD NSGFWRQFTV REGRSPAQAV VAQDTQTQIS EVMIIIQVCS 480 TGVDEVLMKD EFAKLSKTLV QGAATCSPPL PLTTIVVQDH VGISNVAPAD CPLIPLLAPE 540 VDQSEEGAVD KTRIHDHISN LRFSLSPTAF FQVNTLAAER LYTLAGDWAN LNSDTLLFDV 600 CCGTGTIGLT LAHRVGMVVG IEMNESAVVD AQRNALINGI KNCRFVCGKA EDVMGSLLTE 660 YLGSPQQHIA ASESNSEVNG TGKKEDIVGG AEDNGKSMES LTEKNDTGEI NEDLDDGVSK 720 ELEGGHEQCN EAVRNQNSEE ASSLVNEESV DAKAADCSEH TKTREEGSSI SKNDVLAATA 780 CQFKNFVAIV DPPRAGLHPT VIKVLRTHPR IRRLVYISCN PDTLVANAIE LCTPSTEHRE 840 KNKGHRGWRN MSSAGLARQR TKSMPNSEPF VPKRAMAVDL FPHTSHCEMV MLFER |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5xj1_A | 2e-16 | 554 | 660 | 265 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_A | 2e-16 | 554 | 660 | 265 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_B | 2e-16 | 554 | 660 | 265 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_C | 2e-16 | 554 | 660 | 265 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_D | 2e-16 | 554 | 660 | 265 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zq0_A | 2e-16 | 554 | 660 | 266 | 372 | Uncharacterized RNA methyltransferase SP_1029 |
5zq1_A | 2e-16 | 554 | 660 | 265 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zq8_A | 2e-16 | 554 | 660 | 265 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zq8_B | 2e-16 | 554 | 660 | 265 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zth_A | 2e-16 | 554 | 660 | 266 | 372 | Uncharacterized RNA methyltransferase SP_1029 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174158.1 | 0.0 | zinc finger CCCH domain-containing protein 24 | ||||
Swissprot | Q8L7S3 | 0.0 | C3H24_ARATH; Zinc finger CCCH domain-containing protein 24 | ||||
TrEMBL | A0A3B6BY37 | 0.0 | A0A3B6BY37_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446LSU8 | 0.0 | A0A446LSU8_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BS_23097C174.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8493 | 31 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28450.1 | 0.0 | C3H family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|