PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2BS_2244C64CC.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 352aa MW: 39336.4 Da PI: 8.1451

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BS_2244C64CC.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168	3.1e-52	13	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 l pGfrFhPtdeelv++yLkkk+++k++++ e ik+ diyk++PwdLpk + +++e+ewyf+++rd+ky+++ r+nr+t++g+Wkatg Traes_2BS_2244C64CC.1 13 LLPGFRFHPTDEELVSFYLKKKIQQKPISI-ELIKQQDIYKFDPWDLPKlASTSSETEWYFYCPRDRKYHNSARPNRVTAAGFWKATG 99 579*************************.89***********535556788*************************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +d++++s+ +++ vglkk+Lvfykgra +g ktdW+mhe+rl Traes_2BS_2244C64CC.1 100 TDRPIYSSeGTRCVGLKKSLVFYKGRAARGIKTDWMMHEFRL 141 ***856667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.29E-56	12	172	IPR003441	NAC domain
PROSITE profile	PS51005	56.74	13	172	IPR003441	NAC domain
Pfam	PF02365	1.3E-25	15	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MEGRDDVKSD EILLPGFRFH PTDEELVSFY LKKKIQQKPI SIELIKQQDI YKFDPWDLPK 60 LASTSSETEW YFYCPRDRKY HNSARPNRVT AAGFWKATGT DRPIYSSEGT RCVGLKKSLV 120 FYKGRAARGI KTDWMMHEFR LPSLADPSLP KRPIDKNIPL NDSWTICRIF KKPGSMAAQR 180 ALSHAWGAPL PGATEQPMQA SHFASESSTR SLQVAAVAPS SQFISFNCGP SPQVLKGPTI 240 LPFQTQAPSH KPVLHTAPPP LFFDAHFGQP EQSAGFVTGS SADVNASMSC RDQESSTTKH 300 GGKFRSMNNE WEAPGRLDFP FGLVADSSDD WECNIPWESF LSPTVPAEIS QH

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MEGRDDVKSD EILLPGFRFH PTDEELVSFY LKKKIQQKPI SIELIKQQDI YKFDPWDLPK  60
LASTSSETEW YFYCPRDRKY HNSARPNRVT AAGFWKATGT DRPIYSSEGT RCVGLKKSLV  120
FYKGRAARGI KTDWMMHEFR LPSLADPSLP KRPIDKNIPL NDSWTICRIF KKPGSMAAQR  180
ALSHAWGAPL PGATEQPMQA SHFASESSTR SLQVAAVAPS SQFISFNCGP SPQVLKGPTI  240
LPFQTQAPSH KPVLHTAPPP LFFDAHFGQP EQSAGFVTGS SADVNASMSC RDQESSTTKH  300
GGKFRSMNNE WEAPGRLDFP FGLVADSSDD WECNIPWESF LSPTVPAEIS QH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-49	13	175	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-49	13	175	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-49	13	175	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-49	13	175	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	4e-49	13	175	20	171	NAC domain-containing protein 19
3swm_B	4e-49	13	175	20	171	NAC domain-containing protein 19
3swm_C	4e-49	13	175	20	171	NAC domain-containing protein 19
3swm_D	4e-49	13	175	20	171	NAC domain-containing protein 19
3swp_A	4e-49	13	175	20	171	NAC domain-containing protein 19
3swp_B	4e-49	13	175	20	171	NAC domain-containing protein 19
3swp_C	4e-49	13	175	20	171	NAC domain-containing protein 19
3swp_D	4e-49	13	175	20	171	NAC domain-containing protein 19
4dul_A	4e-49	13	175	17	168	NAC domain-containing protein 19
4dul_B	4e-49	13	175	17	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190499.1	0.0	protein FEZ-like
Swissprot	Q9ZVH0	2e-89	FEZ_ARATH; Protein FEZ
TrEMBL	A0A3B6BYV1	0.0	A0A3B6BYV1_WHEAT; Uncharacterized protein
STRING	Traes_2BS_2244C64CC.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3366	38	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-91	NAC family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]