PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BS_1DB727AD1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 195aa MW: 22112.2 Da PI: 10.8945 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.7e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l + v+q+G g+W+++a+ g+ R++k+c++rw +yl Traes_2BS_1DB727AD1.1 14 RGLWSPEEDEKLMNHVAQYGYGCWSSVAKIAGLERCGKSCRLRWMNYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.2 | 1e-14 | 67 | 110 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g++++eE++ +++++ G++ W+ Ia++++ gRt++++k++w+++ Traes_2BS_1DB727AD1.1 67 GAFSQEEEDFIIHLHSIRGNK-WSQIAAHLP-GRTDNEVKNFWNSF 110 78*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-21 | 8 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.069 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.95E-30 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.26E-12 | 17 | 61 | No hit | No description |
SMART | SM00717 | 7.6E-13 | 65 | 113 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.706 | 66 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-19 | 66 | 115 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-13 | 67 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.26E-9 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MSKWPGATKK RLKRGLWSPE EDEKLMNHVA QYGYGCWSSV AKIAGLERCG KSCRLRWMNY 60 LTTGRGGAFS QEEEDFIIHL HSIRGNKWSQ IAAHLPGRTD NEVKNFWNSF IKKKLRQRGI 120 DPATHEHKPL DPAAPAAPAT PVSRNAVFSE NELILSSPVG GPHMPPLVSA ESYVYSRGQH 180 GRRRRCARRG RRVQR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-24 | 3 | 115 | 16 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353785 | 0.0 | AK353785.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1002L23. | |||
GenBank | AK358210 | 0.0 | AK358210.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1071D01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154053.1 | 5e-95 | transcription factor MYB3-like | ||||
Swissprot | Q8LPH6 | 1e-56 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A3B6C4J5 | 1e-143 | A0A3B6C4J5_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BS_1DB727AD1.1 | 1e-144 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3092 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 9e-60 | myb domain protein 55 |
Publications ? help Back to Top | |||
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