PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_2BS_1A9DB766A.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 135aa MW: 15897.1 Da PI: 10.1801 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 153.8 | 3.6e-48 | 34 | 135 | 4 | 104 |
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 e +rw +++ei+a+L+n+e++++++++ ++p sg+++Ly+rk+vr+frkDG++wkkkkdgktv+E+hekLK+g+ e +++yYa++e+ Traes_2BS_1A9DB766A.1 34 EaASRWFRPNEIYAVLANHERFKVHAQPIDKPVSGAIVLYDRKVVRNFRKDGHNWKKKKDGKTVQEAHEKLKIGNEERVHVYYARGED 121 5589************************************************************************************ PP CG-1 91 nptfqrrcywlLee 104 np+f rrcywlL++ Traes_2BS_1A9DB766A.1 122 NPNFFRRCYWLLDK 135 ************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 65.152 | 28 | 135 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.6E-47 | 31 | 135 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 2.3E-40 | 35 | 135 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 135 aa Download sequence Send to blast |
MAGAAGRERD PLLRSEIHGF ITYADLNFEK LKAEAASRWF RPNEIYAVLA NHERFKVHAQ 60 PIDKPVSGAI VLYDRKVVRN FRKDGHNWKK KKDGKTVQEA HEKLKIGNEE RVHVYYARGE 120 DNPNFFRRCY WLLDK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK375447 | 0.0 | AK375447.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3094H17. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186933.1 | 6e-90 | calmodulin-binding transcription activator 5 | ||||
Swissprot | Q7XHR2 | 2e-79 | CBT_ORYSJ; Calmodulin-binding transcription activator CBT | ||||
TrEMBL | A0A3B6C4U6 | 1e-95 | A0A3B6C4U6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446M764 | 1e-95 | A0A446M764_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446M793 | 1e-95 | A0A446M793_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BS_1A9DB766A.1 | 3e-96 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19838 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G16940.1 | 5e-56 | calmodulin binding;transcription regulators |
Publications ? help Back to Top | |||
---|---|---|---|
|