PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BS_186EA570A.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | SBP | ||||||||
Protein Properties | Length: 192aa MW: 20129.4 Da PI: 10.4695 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.3 | 7.8e-42 | 86 | 162 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+e+C adlseak+yhrrhkvCe+hska+vv+v+gl+qrfCqqCsrfhel efD++krsCrrrLa+hnerrrk++a Traes_2BS_186EA570A.1 86 CQAERCGADLSEAKRYHRRHKVCEAHSKAAVVVVAGLRQRFCQQCSRFHELLEFDDQKRSCRRRLAGHNERRRKSSA 162 **************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.9E-34 | 80 | 147 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.06 | 83 | 160 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.36E-39 | 84 | 163 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.8E-31 | 86 | 159 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MDRKDKSRKS SSAASMAALA AAAAAGDVAR ADGMSGEEDQ KLKLVNVPVV SVGGSSSSAA 60 AVAVRRGSGA AGAVATGAAG AGGPSCQAER CGADLSEAKR YHRRHKVCEA HSKAAVVVVA 120 GLRQRFCQQC SRFHELLEFD DQKRSCRRRL AGHNERRRKS SAEANGGDGC RHADQDGRSH 180 PGNPPLNHFQ IR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-36 | 77 | 159 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP091672 | 1e-142 | FP091672.1 Phyllostachys edulis cDNA clone: bphylf033o15, full insert sequence. | |||
GenBank | FP094478 | 1e-142 | FP094478.1 Phyllostachys edulis cDNA clone: bphyst005i03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020152957.1 | 1e-133 | squamosa promoter-binding-like protein 13 | ||||
Swissprot | Q6Z461 | 1e-51 | SPL13_ORYSJ; Squamosa promoter-binding-like protein 13 | ||||
TrEMBL | A0A385UKL6 | 1e-133 | A0A385UKL6_WHEAT; GLW7 | ||||
TrEMBL | A0A446M6U6 | 1e-133 | A0A446M6U6_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BS_186EA570A.1 | 1e-134 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8524 | 32 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 6e-40 | squamosa promoter binding protein-like 4 |
Publications ? help Back to Top | |||
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