PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_10A8CAB27.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 397aa    MW: 42725.3 Da    PI: 6.36
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_10A8CAB27.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.54.2e-30229285156
                G2-like   1 kprlrWtpeLHerFveaveqLGGs.ekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                            kpr++W+peLH+rF+ea++qLGGs  +AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Traes_2BS_10A8CAB27.2 229 KPRRCWAPELHRRFLEALQQLGGSyAVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 285
                            79*********************8358****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.916226287IPR017930Myb domain
SuperFamilySSF466896.63E-16227287IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-27227288IPR009057Homeodomain-like
TIGRFAMsTIGR015575.9E-25229285IPR006447Myb domain, plants
PfamPF002492.0E-6231283IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEMEVPSAQA DRDGARRRLR DYLLALEEER RKIHVFQREL PLCLDLVTQT IEGMKSQMGG  60
AASEETVSDH DGPVLEEFIP LKPSLSLSSS DDETSTHAAA PVSNAKAETP PPTPETKKAM  120
PDWLQSAQLS TWSEPQQSSS LRKVLPCRPV ALNATRTGGA FHPFEKEKQP EAELPASSTT  180
APASSALVGD SGDKATSDTE VHDKDSKDIT EKDTDKDKDK EGQSQPNRKP RRCWAPELHR  240
RFLEALQQLG GSYAVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTSRRP SSTAQSSAAA  300
ATQPTPQFVV VGSCIWVPQQ EYAAAAAAAA ATNVASGSPN QVYAPTATLP SGLKPHLAKQ  360
SSRRSEGPRS GDTGGVNSDS DNPTMSSSSQ TTSAGHP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate. {ECO:0000269|PubMed:23324170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3616380.0AK361638.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1145I13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198678.10.0myb family transcription factor EFM-like
RefseqXP_020198679.10.0myb family transcription factor EFM-like
SwissprotQ6Z8691e-129NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBLA0A446LXY50.0A0A446LXY5_TRITD; Uncharacterized protein
STRINGTraes_2BS_10A8CAB27.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64703754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.17e-49G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Sawaki N, et al.
    A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice.
    Plant Cell Physiol., 2013. 54(4): p. 506-17
    [PMID:23324170]