PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_015167E00.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 448aa    MW: 48529.4 Da    PI: 9.3611
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_015167E00.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS323.73.6e-99694092350
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                             +lLl+cAeav+ ++l +a+ +L+++ elasp g++ +R+aayf  AL ar+++s  + y+ l+ ++ +  +s +  +a+++++ +sP
  Traes_2BS_015167E00.1  69 LRLLLRCAEAVAMDQLPEARDMLQEVAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLALRPLAAAQSRRISSAFQAYNALSP 156
                            689******************************************************************99***************** PP

                   GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                            ++kfsh+taN+aIl+a++ge++vH+iD+di+qGlQWp L++ LasRp+ p slR+Tg+g+    s + le+tg+rLa+fA++lg+pfe
  Traes_2BS_015167E00.1 157 LVKFSHFTANKAILQALDGEDHVHVIDLDIMQGLQWPGLFHMLASRPRRPLSLRVTGLGA----SLDVLEATGRRLADFAASLGLPFE 240
                            ************************************************************....9*********************** PP

                   GRAS 178 fnvlvakrledleleeL...rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                            f+++  k  +  ++ +L   r +++Ea++V++++  h l+d ++s       +++l+ksl+Pk++++veq++ h s++Fl rf+eal+
  Traes_2BS_015167E00.1 241 FQPIEGKIGHVADTTALlgpRHRHREATVVHWMH--HCLYDVTGSDVG----TVRLLKSLRPKLITIVEQDLGH-SGDFLGRFVEALH 321
                            ***866655556777775656666*********9..889988999998....**********************.899********** PP

                   GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgy 349
                            yysalfd+l  ++++++eer+ vEr+llg ei+n+va  g +r+ + + +e+W + l++aGF+pv+l  + a+qa+ll+ +++ ++g 
  Traes_2BS_015167E00.1 322 YYSALFDALRDGAGAAEEERHAVERQLLGAEIRNIVAVGGPKRTGEVR-VERWGDELRRAGFRPVSLAGSPAAQARLLIGMYPxVEGL 408
                            *********9999*****************************998887.9********************************988886 PP

                   GRAS 350 r 350
                            +
  Traes_2BS_015167E00.1 409 H 409
                            5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.80342412IPR005202Transcription factor GRAS
PfamPF035141.3E-9669409IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MIQGVLSRAP ATDAMKAKRA ASMPDDEEKA RGKRLQLHGS ASEQGLAVAA GEEGERVVEA  60
AETRVLRLLR LLLRCAEAVA MDQLPEARDM LQEVAELASP FGSSPERVAA YFGDALCARV  120
LSSYLGAYSP LALRPLAAAQ SRRISSAFQA YNALSPLVKF SHFTANKAIL QALDGEDHVH  180
VIDLDIMQGL QWPGLFHMLA SRPRRPLSLR VTGLGASLDV LEATGRRLAD FAASLGLPFE  240
FQPIEGKIGH VADTTALLGP RHRHREATVV HWMHHCLYDV TGSDVGTVRL LKSLRPKLIT  300
IVEQDLGHSG DFLGRFVEAL HYYSALFDAL RDGAGAAEEE RHAVERQLLG AEIRNIVAVG  360
GPKRTGEVRV ERWGDELRRA GFRPVSLAGS PAAQARLLIG MYPXVEGLHA GGGGRVPQAR  420
VEGPLPAHSI VVGADGRRPR RRCRAKTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1397440324349Protein SCARECROW
5b3h_D1e-1397440324349Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1436441RRPRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038660.0AP003866.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1092_A07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200232.10.0scarecrow-like protein 23 isoform X1
SwissprotQ9FHZ11e-146SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A3B6C3L20.0A0A3B6C3L2_WHEAT; Uncharacterized protein
TrEMBLA0A446M4E60.0A0A446M4E6_TRITD; Uncharacterized protein
STRINGTraes_2BS_015167E00.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-138GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]