PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_FE46FC938.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 427aa MW: 46265.8 Da PI: 7.8114 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 24.7 | 5.7e-08 | 77 | 111 | 16 | 55 |
AP2 16 vAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +A++rd + k+++lg f+ta Aa+a+++a+ k++g Traes_2BL_FE46FC938.1 77 FAQCRD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 111 5999**......55************************998 PP | |||||||
2 | AP2 | 43.3 | 9.1e-14 | 153 | 203 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+eeAa+ +++a+ k +g Traes_2BL_FE46FC938.1 153 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARSYDRAAIKCNG 203 89********.7******5553..2.26**********************99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.1E-13 | 71 | 125 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.034 | 78 | 119 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-9 | 81 | 120 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-11 | 84 | 119 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-17 | 153 | 212 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.63E-26 | 153 | 213 | No hit | No description |
Pfam | PF00847 | 7.1E-10 | 153 | 203 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-33 | 154 | 217 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.186 | 154 | 211 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-16 | 154 | 211 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
AAAAAKEEKR KEDGFGIGFV LFWAFHASAP FAFHSNVHLI KLILLPSFLP SVFLSLLPSP 60 LLLSSPLTLL TLSPHSFAQC RDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GMEADINFSL 120 EDYDDIKQMG NLTKEEFVHV LRRQSTGFPR GSSKYRGVTL HKCGRWEARM GQFLGKKYVY 180 LGLFDTEEEA ARSYDRAAIK CNGKDAVTNF DPSTYAEEFE PTASAGDAEQ NLDLSLGSSA 240 GSNKRGSLDG GDDDGAAGPD QRVPMAFELD WQTAAARSTK AKFDQSFTHH QMPPPLLQAS 300 HMPFSPRHHQ FMGNGDPGTA GGPSLTVGAG GGGGHWPLPP HHQYQPPPPP QQQQQQQQRL 360 HGWGNVVPGT SWQPPQPPPH HQAGPPPNNA AAAAAAAAAS SRFPPYIATQ AQSWLQKNGF 420 HSLARPT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360149 | 0.0 | AK360149.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1111J04. | |||
GenBank | AK371953 | 0.0 | AK371953.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143N17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161606.1 | 0.0 | AP2-like ethylene-responsive transcription factor TOE3 | ||||
Swissprot | B8AVJ9 | 1e-148 | APL25_ORYSI; APETALA2-like protein 5 | ||||
TrEMBL | A0A446MTS7 | 0.0 | A0A446MTS7_TRITD; Uncharacterized protein | ||||
TrEMBL | M5A9S1 | 0.0 | M5A9S1_9POAL; TaAP2-B | ||||
TrEMBL | M5A9V3 | 0.0 | M5A9V3_TRITU; TaAP2-B | ||||
TrEMBL | M5A9W0 | 0.0 | M5A9W0_9POAL; TaAP2-B | ||||
TrEMBL | M5A9Z8 | 0.0 | M5A9Z8_9POAL; TaAP2-B | ||||
TrEMBL | M5AAW8 | 0.0 | M5AAW8_WHEAT; TaAP2-B | ||||
TrEMBL | M5AB39 | 0.0 | M5AB39_TRITD; TaAP2-B | ||||
TrEMBL | M5AX29 | 0.0 | M5AX29_9POAL; TaAP2-B | ||||
STRING | Traes_2BL_FE46FC938.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5514 | 36 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 6e-81 | AP2 family protein |
Publications ? help Back to Top | |||
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