PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_FD8C2F815.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 361aa MW: 38732.6 Da PI: 4.6737 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.6e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l+ +++++G +W++ ++ g+ R++k+c++rw +yl Traes_2BL_FD8C2F815.1 16 RGSWTPEEDMRLIAYIQKFGHANWRALPKQAGLLRCGKSCRLRWINYL 63 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 56.1 | 8.7e-18 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE+e l++++++lG++ W++Ia++++ gRt++++k+ w+++l Traes_2BL_FD8C2F815.1 69 RGNFTVEEEETLIKLHNMLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.555 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.24E-30 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-13 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-15 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.34E-10 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.945 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 6.7E-16 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-16 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-26 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.49E-12 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MGKGRAPCCA KVGLNRGSWT PEEDMRLIAY IQKFGHANWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDLKRG NFTVEEEETL IKLHNMLGNK WSKIAACLPG RTDNEIKNVW NTHLKKRVAA 120 SAGEQKKGGA KGKKKTTCVD VPAPAPSPSP SSSTTTTTTT TTNCSSGESG EQSNSSKELE 180 FELDKIEIPM LDLGFDLDML LDTVTNTHCP AIPSAPTSPC SSASPPCVVD DGALLDLPEI 240 DIVPELWSIM DGEGGAGACA ETAQDNAAPC HGKGTEARAA TADDDDGKEW WLEDLEKELG 300 LWGPIEDYQH QQPDPQGCVD PLSASVDDPV SCYFQAGPAR ATSAVQGPEA SAVLANIPMD 360 L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-27 | 14 | 118 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 3e-27 | 14 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 2e-27 | 14 | 118 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-27 | 14 | 118 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248649 | 0.0 | AK248649.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf178a22, mRNA sequence. | |||
GenBank | AK369689 | 0.0 | AK369689.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2095N02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185012.1 | 0.0 | myb-related protein Zm1-like | ||||
Swissprot | P20024 | 1e-111 | MYB1_MAIZE; Myb-related protein Zm1 | ||||
TrEMBL | A0A3B6CCE7 | 0.0 | A0A3B6CCE7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446MP35 | 0.0 | A0A446MP35_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_FD8C2F815.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2154 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 7e-70 | myb domain protein 63 |
Publications ? help Back to Top | |||
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