PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_FA727026F.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | G2-like | ||||||||
Protein Properties | Length: 275aa MW: 30581.6 Da PI: 6.8017 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.2 | 7.5e-33 | 29 | 83 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtp+LH+rFv+av++LGG++kAtPk +l+lm +kgLtl+h+kSHLQkYRl Traes_2BL_FA727026F.1 29 KQRLRWTPDLHDRFVHAVARLGGPDKATPKGVLRLMAMKGLTLYHLKSHLQKYRL 83 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.988 | 26 | 86 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-31 | 26 | 84 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.6E-24 | 29 | 84 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 7.17E-16 | 29 | 83 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-7 | 31 | 82 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.3E-19 | 126 | 172 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MFEGMEGMSY GGGAAGAGAG AAALSRDPKQ RLRWTPDLHD RFVHAVARLG GPDKATPKGV 60 LRLMAMKGLT LYHLKSHLQK YRLGKHTKKS TDLELANNGE FTSQDISFQI GAPLVVPAGR 120 DTAREMPLED TLRYQIQVQR ELCEQLEVQK KLQMRIEAQG RYLKEILEKA QENISFDANG 180 SAGLENTRSQ LTDFNLALPG LTENGRQVYE ESGEQLVKDM SDDNLHDNNL DFQLYRVRSQ 240 EAKSVKCTPK TEDLLLLDLN IKGGYDLSSR GMQGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-21 | 29 | 86 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-21 | 29 | 86 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-21 | 29 | 86 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-21 | 29 | 86 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK371512 | 0.0 | AK371512.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2136B23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164352.1 | 1e-180 | myb family transcription factor PHL11-like | ||||
TrEMBL | A0A3B6CC87 | 0.0 | A0A3B6CC87_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BL_FA727026F.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3940 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 2e-62 | G2-like family protein |
Publications ? help Back to Top | |||
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