PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_F38E03233.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 157aa MW: 17414.6 Da PI: 8.7936 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.6 | 1.9e-12 | 100 | 146 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h ++Er RRd++N +f Lr +P+ +++Ka+ L Av YI +L Traes_2BL_F38E03233.1 100 VSHVQAERLRRDKLNRRFCDLRAAVPNV-----SRMDKASLLADAVAYIAEL 146 5899***********************6.....4***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.5E-15 | 95 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.856 | 97 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.71E-9 | 100 | 151 | No hit | No description |
Pfam | PF00010 | 5.9E-10 | 100 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-14 | 101 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.5E-10 | 103 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MDDLLSPSSS FVPPSPSSHF STVGQQVLEF VSREIPEQWL FDDGTMSQNA DRELSPTGRT 60 LLRSAELSEL PPSLPATLQC QTNRRGRKTG PRSDGRHSAV SHVQAERLRR DKLNRRFCDL 120 RAAVPNVSRM DKASLLADAV AYIAELRSRV ARLGDEA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-21 | 95 | 152 | 2 | 59 | Transcription factor MYC2 |
5gnj_B | 6e-21 | 95 | 152 | 2 | 59 | Transcription factor MYC2 |
5gnj_E | 6e-21 | 95 | 152 | 2 | 59 | Transcription factor MYC2 |
5gnj_F | 6e-21 | 95 | 152 | 2 | 59 | Transcription factor MYC2 |
5gnj_G | 6e-21 | 95 | 152 | 2 | 59 | Transcription factor MYC2 |
5gnj_I | 6e-21 | 95 | 152 | 2 | 59 | Transcription factor MYC2 |
5gnj_M | 6e-21 | 95 | 152 | 2 | 59 | Transcription factor MYC2 |
5gnj_N | 6e-21 | 95 | 152 | 2 | 59 | Transcription factor MYC2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195652.1 | 2e-70 | transcription factor MYC2-like | ||||
TrEMBL | A0A3B6CCH9 | 1e-109 | A0A3B6CCH9_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446MP81 | 1e-109 | A0A446MP81_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_F38E03233.1 | 1e-110 | (Triticum aestivum) | ||||
STRING | Traes_2BL_F38E032331.1 | 1e-110 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 3e-22 | bHLH family protein |
Publications ? help Back to Top | |||
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