PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_F09BA733D.4
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 337aa    MW: 38571.9 Da    PI: 10.6688
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_F09BA733D.4genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34.1e-06281302326
                            S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                             e Cr++++   C++ ++C+FaH+
  Traes_2BL_F09BA733D.4 281 VEVCRDYLK-KMCNR-ESCRFAHP 302
                            589******.*****.*******9 PP
2zf-CCCH20.31e-06312334226
                            -S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                            k e Cr+f r G+C + ++C+F H+
  Traes_2BL_F09BA733D.4 312 KVEVCRDFKR-GECTR-PTCRFYHP 334
                            89********.*****.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.28296124IPR000571Zinc finger, CCCH-type
SMARTSM003560.1597123IPR000571Zinc finger, CCCH-type
PfamPF146080.063102122No hitNo description
SMARTSM003560.21131157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.836131158IPR000571Zinc finger, CCCH-type
PfamPF146083.4143156No hitNo description
PROSITE profilePS5010313.094173201IPR000571Zinc finger, CCCH-type
SMARTSM003560.019174200IPR000571Zinc finger, CCCH-type
PfamPF146083.1179198No hitNo description
SMARTSM003568.4203228IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.779203229IPR000571Zinc finger, CCCH-type
SMARTSM003560.011278303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.774278304IPR000571Zinc finger, CCCH-type
PfamPF146080.0097284302No hitNo description
SMARTSM003560.011310335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.929311336IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4312334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MASAEIPNAD TADPNPSPNP AARSPSPPLP PRKRRLSLSP SRSTSPRRSV SRSRSPRDRR  60
SRSRSRSRSR SRSRSRSRSR SRSPRQPEGK RRRQNDLTVE ACRDYLRDRC TRSDLECKYA  120
HPHQSVSVDR DSKVTACADS LRNNCFRGRT CRYYHPPPHI QESLLRSIGL DVPPVKTVCR  180
DFARGRCSRS ANECRFLHHS SVQECAIVCQ DFLRGRCDRI SCRYTHVIAQ PMLPPPMRDV  240
PMQMPYPEMV YMPPPPPPLG VPMMAPPLSP PRGFADNKST VEVCRDYLKK MCNRESCRFA  300
HPDSQTEVAH DKVEVCRDFK RGECTRPTCR FYHPSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5u6h_A1e-14971641479Muscleblind-like protein 1
5u9b_A1e-14971641479Muscleblind-like protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17181RSRSRSRSRSR
27381RSRSRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3691860.0AK369186.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2086G01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165259.11e-170zinc finger CCCH domain-containing protein 28-like
SwissprotQ0JD071e-136C3H28_ORYSJ; Zinc finger CCCH domain-containing protein 28
TrEMBLA0A3B6C7M50.0A0A3B6C7M5_WHEAT; Uncharacterized protein
TrEMBLA0A446MDL90.0A0A446MDL9_TRITD; Uncharacterized protein
STRINGTraes_2BL_F09BA733D.40.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109041922
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]